BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44870.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315473 jgi|Araly1|315473|fgenesh1_pm.C_scaffold_2000506 1022 0.0
> Ahg315473 jgi|Araly1|315473|fgenesh1_pm.C_scaffold_2000506
Length=744
Score = 1022 bits (553), Expect = 0.0
Identities = 692/756 (92%), Gaps = 21/756 (3%)
Strand=Plus/Plus
Query 113 ATGTGGCCTTCCACATCACCTAGATTCACCATCACCACACCTTATCCACA--C--C---C 165
|||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 1 ATGTGGCCTTCCACATCACCCAGATTCACCATCACCACACCTTATCCACACCCTGCGTAC 60
Query 166 AC-GCGC-CGCCTCTTCTTTCTTACAGGTGAAAGCTTTCCAACGCGGCGACTTTGACCGT 223
|| | | |||| | |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 ACTTCACGCGCCGCCTCTTTCTTACAGGTGAAAGCCTTCCAACGCGGTGACTTTGACCGT 120
Query 224 TTGGCTGATAACGTTAAGTCAGGTAAAGCATGGAGAGACGCGTGGAGAAGCGCTAACGAT 283
|| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTCGCTGATAACGTTAAGTCCGGGAAAGCTTGGAGAGACGCGTGGAGAAGCGCTAACGAT 180
Query 284 GGATTCGAGCAATTCGTTTTTGAGGCTAAGAAAACCGCTGAGCGAATTGATCGCCAATAC 343
|||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 181 GGATTCGAGCAATTTGTTTTTGAGGCTAAGAAGACTGCTGAGCGAATTGATCGGCAATAC 240
Query 344 GCTGTTTCTCGCCGCTTTAGCTCCGCTGCTAGCTCAGCCGCTGACCGTGCTCGTGAGATT 403
|||||||||||||| ||||||||||||||||| || || | |||||||||||||||||||
Sbjct 241 GCTGTTTCTCGCCGGTTTAGCTCCGCTGCTAGTTCTGCTGGTGACCGTGCTCGTGAGATT 300
Query 404 GATCGTGAGTTTGGGATTACTCCTCGTGTTAGGACTGTCTCTGCCGATTTCAGTAGAAAT 463
||||||||||||||||||| |||||||||||||| | ||||||| ||||| |||||||||
Sbjct 301 GATCGTGAGTTTGGGATTAGTCCTCGTGTTAGGAGTTTCTCTGCTGATTTGAGTAGAAAT 360
Query 464 TTCCCTAAGTACAGGAAGCAATTCAGTGCATTCTTGAATACACCGCTTGGTGGAAGTTTT 523
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 361 TTCCCAAAGTACAGGAAGCAATTCAGTGCTTTCTTGAATACACCGCTCGGTGGAAGTTTT 420
Query 524 GCTACTATTTTCTTCCTTTGGTTTGCTCTCTCTGGATGGCTGTTCCGAGTTATAATAATC 583
|||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 421 GCTACTATTTTCTTTCTTTGGTTTGCCCTCTCTGGATGGCTATTCCGAGTAATAATAATC 480
Query 584 GCCACTTGGGTTCTTCCAATTGCTGGCCCTCTTCTCATTGGTGCAGTCGCCAACAACTTT 643
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 481 GCGACTTGGGTTCTTCCAATTGCTGGCCCTCTTCTCATTGGTGCAGTGGCCAACAATTTT 540
Query 644 GTCATCAAGGGAGAATGCCCAGCATGTAAGAGGCAGTTTATAGGGTACAAGAACCAAATC 703
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 541 GTCATCAAGGGAGAATGCCCAGCATGTAAGAGGCAGTTCATAGGATACAAGAGCCAAATC 600
Query 704 ATCAGATGTGAGGGATGTGGGAACATAGTGTGGCAACCACAAGGCGATTTCTTCTCAAAA 763
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 601 ATCAGATGCGAGGGATGTGGGAACATAGTGTGGCAGCCACAAGGCGACTTCTTCTCAAAA 660
Query 764 GATGGcaacaacaacaacaacaaTAATAATAGCAAGGGAAACTCTAAAAAGCCACCTAAG 823
|||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 661 GATGGCAACAACAATAACA------------GCAAGGGAAACTCTAAAAAGCCACCTAAG 708
Query 824 TCCCAAATCATTGATGTCGATTTTGAGGAGAAATGA 859
|||||||||||||||||||||||||| |||||||||
Sbjct 709 TCCCAAATCATTGATGTCGATTTTGAAGAGAAATGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5