BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44900.1
Length=3327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935440 jgi|Araly1|935440|scaffold_403428.1 4641 0.0
Ahg939070 jgi|Araly1|939070|scaffold_503261.1 2442 0.0
> Ahg935440 jgi|Araly1|935440|scaffold_403428.1
Length=2831
Score = 4641 bits (2513), Expect = 0.0
Identities = 2713/2811 (97%), Gaps = 7/2811 (0%)
Strand=Plus/Plus
Query 519 TATCTGATCAAAGG-TAATGAGTCGTAGGGTACGGAGAAAATTGGAGGAGGAAAAAGGGA 577
||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 5 TATCTGATC-AAGGAGAATGAGTCGTAGGGTACGGAGGAAATTGGAGGAGGAAAAAGGGA 63
Query 578 AAGATAAGGTTGTTGTTTTGCCAAGTTATCCTGAGACTAGCATTAGCAACGAGGAGGATT 637
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 64 AAGATAAGGTTGTTGTTTTGCCAAGTTATCCTGAGACTAGCATTAG---CGATGAGGATT 120
Query 638 TAGTAGCTCCTGAGCTTCTTCATGGTTTTGTTGATTGGATTAGTCTGCCTTATGACACAG 697
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TAGTAGCTCCTCAGCTTCTTCATGGTTTTGTTGATTGGACTAGTCTGCCTTATGACACAG 180
Query 698 TGCTTCAGTTGTTTACTTGTTTGAATTATCGTGATCGAGCTAGCTTGGCATCGACTTGTA 757
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 181 TTCTTCAGTTGTTTACTTGTTTGAATTATCGCGATCGAGCTAGCTTGGCATCCACTTGTA 240
Query 758 AGACATGGAGATGTCTTGGTGCTTCTTCTTGTTTGTGGACTTCATTGGATCTTCGTCCTC 817
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 AGACATGGAGATGTCTTGGTGCTTCTTCTTGTTTGTGGGGTTCATTGGATCTTCGTCCTC 300
Query 818 ACAAGTTTGATGCTTCAATGGCAGCTTCTCTTGCTTCTAGGTGTGTTAATCTTCATTACT 877
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ACAAGTTTGATGCTTCAATGGCAGCTTCTCTTGCTTCTAGGTGTGTTAATCTTCATAACT 360
Query 878 TAAGGTTTCGTGGTGTTGAATCAGCTGATTCCCTTATACATCTCAAAGCTAGGAATCTAA 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAAGGTTTCGTGGTGTTGAATCAGCTGATTCCCTTATACATCTCAAAGCTAGGAATCTAC 420
Query 938 TTGAAGTAAGCGGCGACTATTGCAAGAAAATAACTGATGCCACATTGTCAATGATAGTGG 997
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct 421 TTGAAGTAAGCGGCGACTATTGCAGGAAGATAACTGATGCCACATTGTCAATGATCGTGG 480
Query 998 CGCGACATGAGGCACTTGAGAGTCTCCAACTTGGACCTGACTTTTGTGAGAGGATCACTA 1057
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 CGCGACATGAGGCACTTGAGAGTCTCCAACTTGGACCTGACTTTTGTGAGAAGATCACTA 540
Query 1058 GTGATGCTATCAAAGCTGTTGCCTTTTGTTGTCCTAAGCTTAAAAAGCTTCGCCTTTCTG 1117
|||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct 541 GTGATGCTATTAAAGCTGTAGCCTTTTGTTGTCCAAAGCTTACAAAGCTTCGCCTTTCTG 600
Query 1118 GGATTAGAGATGTGACTTCTGAAGCCATTGAAGCTCTGGCCAAGCATTGTCCACAGCTCA 1177
|||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 601 GGATAAGAGATGTTACTTCTGAAGCTGTTGAAGCTCTGGCCAAACATTGTCCACAGCTCA 660
Query 1178 ATGATCTCGGGTTCTTAGATTGTCTAAACATTGACGAGGAGGCTCTGGGAAAAGTTGTAT 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 GTGATCTCGGGTTCTTAGATTGTCTAAACATTGACGAGGAGGCTCTGGGAAAAGTGGTAT 720
Query 1238 CTGTTCGATACCTCTCTGTTGCTGGGACATCAAACATAAAATGGTCAATTGCATCAAATA 1297
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 CTGTTCGGTACCTTTCTGTTGCTGGGACATCAAACATAAAATGGTCAACTGCATCAAATA 780
Query 1298 ATTGGGATAAGCTTCCGAAATTAACCGGTTTGGATGTCTCGAGGACCGACATTGGACCCA 1357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTGGGATAAGCTTCCGAAATTAACCGGTTTGGATGTCTCGAGGACCGACATTGGACCCA 840
Query 1358 CCGCAGTTTCTAGGTTCTTGACATCATCACAGAGCTTGAAAGTATTGTGTGCTTTAAACT 1417
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 841 CCGCAGTTTCTAGGTTCTTGACATCGTCGCAGAGCTTGAAAGTATTGTGTGCTTTAAACT 900
Query 1418 GTCATGTCCTCGAAGAGGATGA-AAGTTTAATCAGCTATAACCGATTCAAAGGAAAAGTC 1476
|||||||||||||||||||| | |||||| | |||| ||| |||||||||||||||||
Sbjct 901 GTCATGTCCTCGAAGAGGAT-ACAAGTTTCTTTAGCTCCAACAGATTCAAAGGAAAAGTC 959
Query 1477 TTACTTGCTCTGTTTACTAATGTTTTTGATGGACTTGCTTCTATATTCGCCGATAATACA 1536
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 960 TTACTTGCTCTGTTTACTAATGTTTTCGATGGACTTGCTTCAATATTCGCCGATAAGACA 1019
Query 1537 AAGAAACCAAAGGATATCTTTGCCTATTGGAGAGAATTGATGAAAACAACCAAGGATAAA 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGAAACCAAAGGATATCTTTGCCTATTGGAGAGAATTGATGAAAACAACCAAGGATAAA 1079
Query 1597 ACAATTAATGACTTTATACATTGGATCGAATGGATTATCTCTCATACGCTTCTACGAACT 1656
|| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACCGTTGATGACTTTATGCATTGGATCGAATGGATTATCTCTCATACGCTTCTACGAACT 1139
Query 1657 GCAGAGTGTAATCCAGAAGGATTGGATGATTTCTGGCTGAATGAAGGAGCCGCATTGCTG 1716
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1140 GCAGAGTGTAATCCACAAGGATTGGATGATTTCTGGCTGAATCAAGGAGCCGCATTGTTG 1199
Query 1717 CTTAATTTAATGCAAAGCTCACAGGAAGATGTCCAGGAGAGATCAGCTACTGGGCTTGCA 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTTAATTTAATGCAAAGCTCACAGGAAGATGTCCAGGAGAGATCAGCTACTGGGCTTGCA 1259
Query 1777 ACTTTTGTAGTTGTTGATGATGAGAATGCTAGTATAGACTGTGGAAGAGCTGAAGCAGTT 1836
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACTTTCGTAGTTATCGATGATGAGAATGCTAGTATAGACTGTGGAAGAGCTGAAGCAGTT 1319
Query 1837 ATGAAAGATGGAGGTATTCGCCTTCTTCTAGAACTTGCGAAATCATGGCGAGAAGGGCTT 1896
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1320 ATGAAAGATGGAGGTATCCGTCTTCTTCTGGAACTTGCGAAATCATGGCGAGAAGGGCTT 1379
Query 1897 CAGTCAGAAGCTGCAAAGGCTATTGCAAATTTGTCGGTAAATGCTAATATTGCAAAGTCT 1956
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1380 CAGTCAGAAGCTGCAAAGGCTATTGCAAATTTGTCGGTAAATGCTAATGTTGCAAAGTCT 1439
Query 1957 GTTGCTGAAGAAGGAGGAATCAAAATTCTTGCTGGTTTGGCAAAGTCAATGAACAGACTT 2016
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1440 GTTGCTGAAGAAGGAGGAATCAAAATTCTAGCTGGTTTGGCAAAGTCAATGAACAGACTT 1499
Query 2017 GTGGCTGAGGAAGCTGCTGGTGGACTATGGAATCTCTCTGTCGGAGAAGAGCATAAGAAT 2076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GTGGCTGAGGAAGCTGCTGGTGGACTATGGAATCTCTCTGTCGGAGAAGAGCATAAGAAT 1559
Query 2077 GCTATTGCTCAGGCTGGAGGAGTGAAGGCACTGGTCGACCTTATATTTAGATGGCCAAAT 2136
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1560 GCTATTGCTCTGGCTGGAGGAGTAAAGGCACTGGTCGACCTTATATTTAGATGGCCAAAT 1619
Query 2137 GGCTGTGATGGAGTCTTGGAACGAGCTGCAGGAGCATTAGCAAACTTAGCAGCAGATGAT 2196
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GGCTGTGATGGAGTTTTGGAACGAGCTGCAGGAGCATTAGCAAACTTAGCAGCAGATGAT 1679
Query 2197 AAATGCAGCATGGAAGTCGCAAAAGCGGGAGGCGTACATGCCCTTGTGATGTTGGCTCGG 2256
|||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1680 AAATGCAGCATGGAAGTCGCAACAGCGGGAGGCGTACATGCCCTTGTTATGTTAGCTCGT 1739
Query 2257 AATTGCAAGTACGAGGGAGTGCAAGAACAGGCTGCTCGTGCTTTAGCTAATTTGGCTGCT 2316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 AATTGCAAGTACGAGGGAGTGCAAGAACAGGCTGCTCGTGCTTTAGCTAATTTGGCTGCT 1799
Query 2317 CATGGAGATAGCAACAATAATAATGCTGCGGTTGGGCAAGAAGCAGGTGCATTAGAAGCT 2376
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1800 CATGGAGATAGCAACAATAATAATGCTGCGGTTGGACAAGAAGCAGGTGCATTAGAAGCT 1859
Query 2377 CTTGTCCAACTTACAAAATCGCCTCATGAAGGAGTTAGACAAGAAGCTGCTGGTGCTCTA 2436
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1860 CTTGTCCAACTTACACAATCGCTTCATGAAGGAGTTAGACAAGAAGCTGCTGGTGCTCTA 1919
Query 2437 TGGAATTTGTCGTTTGATGATAAGAATCGAGAATCTATCTCTGTAGCTGGTGGTGTTGAA 2496
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1920 TGGAATTTGTCGTTTGATGATAAGAATCGAGAATCTATCGCTGTAGCTGGTGGTGTTGAA 1979
Query 2497 GCTTTGGTGGCGCTCGCACAGTCTTGTTCAAATGCATCGACAGGTCTTCAAGAAAGAGCT 2556
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1980 GCTTTGGTGGTGCTCGCGCAGTCGTGTTCAAATGCATCGACAGGTCTTCAAGAAAGAGCT 2039
Query 2557 GCTGGTGCACTTTGGGGATTATCGGTGTCAGAAGCAAACAGCGTTGCGATTGGACGTGAA 2616
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 GCTGGTGCGCTTTGGGGATTATCGGTGTCAGAAGCAAACAGCGTTGCGATTGGACGTGAA 2099
Query 2617 GGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAGGATGTACATGAAACT 2676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTGAAGCCGAGGATGTACATGAAACT 2159
Query 2677 GCAGCAGGAGCTCTATGGAATCTTGCTTTTAATCCTGGTAATGCACTCCGCATTGTTGAG 2736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 GCAGCAGGAGCTCTATGGAATCTTGCTTTTAATCCTGGTAATGCACTCCGCATTGTTGAG 2219
Query 2737 GAAGGAGGAGTTCCAGCTCTTGTTCACTTGTGTTCGTCTTCTGTCTCAAAAATGGCTCGA 2796
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2220 GAAGGAGGAGTTCCAGCTCTTGTTCACTTGTGTTTGTCTTCTGTCTCAAAAATGGCTCGA 2279
Query 2797 TTCATGGCTGCATTGGCTTTGGCATACATGTTTGATGGAAGGATGGATGAATATGCTCTG 2856
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2280 TTTATGGCTGCATTGGCTTTGGCATACATGTTTGATGGAAGGATGGATGAATACGCTTTG 2339
Query 2857 ATGATAGGAACTTCTTCATCAGAGAGCACATCGAAAAACATTAGCTTAGATGGGGCAAGA 2916
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2340 ATGATAGGAACTTCTTCATCAGAGAGCACATCTAAAAGCATTAGCTTAGATGGGGCAAGA 2399
Query 2917 AACATGGCTCTTAAACACATTGAAGCTTTTGTCCTAAGTTTTATAGATCCTCACATATTT 2976
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2400 AACATGGCTCTTAAACACATTGAAGCTTTTGTCCTAACTTTTATAGATCCTCACATCTTT 2459
Query 2977 GAATCTCCTGTTGTTTCATCTACCCCTACTATGCTAGCACAAGTCACAGAGAGAGCTCGC 3036
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2460 GAATCTCCTGTTGTTTCTTCTACCCCTACTATGCTGGCACAAGTCACAGAGAGAGCTCGC 2519
Query 3037 ATACAAGAAGCTGGCCATTTGAGATGCAGTGGTGCTGAAATTGGAAGATTTGTAACAATG 3096
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2520 ATACAAGAAGCTGGCCACTTGAGATGCAGTGGTGCTGAAATTGGAAGATTTGTAACAATG 2579
Query 3097 TTGCGCAATCCTGATTCAACACTCAAAGCATGTGCTGCGTTTGCGCTTCTTCAGTTTACA 3156
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2580 TTGCGGAATCCTGATTCGACACTCAAAGCATGTGCTGCGTTTGCGCTTCTTCAGTTTACA 2639
Query 3157 ATACCGGGTGGTCGACATGCAATGCATCACGTAAGCCTTATGCAGAACGGAGGAGAATCG 3216
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2640 ATACCGGGTGGTCGTCATGCAATGCATCACGTAAGCCTGATGCAGAATGGAGGAGAATCG 2699
Query 3217 AGATTCCTTCGTTCTGCAGCTGCTTCTGCAAAAACGCCTCGTGAAGCTAAGATCTTTACG 3276
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2700 AGATTTCTTCGTTCTGCAGCTGCTTCTGCAAAAACGCCTCGTGAAGCTAAGATCTTTACG 2759
Query 3277 AAAATTCTCCTACGCAATCTCGAGCATCACCAGGCGGAATCTTCCATTTAA 3327
|||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2760 AAAATTATCCTACGCAATCTCGAGCATCACCAGGCAGAATCTTCCATTTAA 2810
> Ahg939070 jgi|Araly1|939070|scaffold_503261.1
Length=2828
Score = 2442 bits (1322), Expect = 0.0
Identities = 2351/2838 (83%), Gaps = 109/2838 (4%)
Strand=Plus/Plus
Query 520 ATCTGATCAAAGGTAATGAGTCGTAGGGTACGG-AGAAAATTGGAGGAGGAAAAAGGGAA 578
|||||||| ||| | |||||||||||||| ||| || | | | |||||||||| ||||
Sbjct 8 ATCTGATC-AAGAT-ATGAGTCGTAGGGTGCGGCAG-AGA---GTGGAGGAAAAA-GGAA 60
Query 579 AG-ATAAGGTTGTTGTTTTGCCAAGTTATCCTGAGACTAGCATTAGCAACGAGGAGGATT 637
|| ||||||||| || | |||||||||||| | | | ||| | | || ||||| |
Sbjct 61 AGAATAAGGTTG--ATTCT-CCAAGTTATCCT--G--T-G-ATT-G-GA-GATGAGGA-T 107
Query 638 TAGTAGCTCCTGAGCTTCTTCATG-GTTTTGTTGATTGGATTAGTCTGCCTTATGACACA 696
| |||| | | || |||| | | | | ||||||| |||| |||||||||||||
Sbjct 108 T--TAGCACATAAG---GTTCAAGAG-TATCCGGATTGGACTAGTTTGCCTTATGACACT 161
Query 697 GTGCTTCAGT-TGTTTACTTGTTTGAATTATCGTGATCGAGCTAGCTTGGCATCGACTTG 755
|||||| | | |||||||| | ||||||||||||||| |||||||||| || || || ||
Sbjct 162 GTGCTTTA-TCTGTTTACTCGATTGAATTATCGTGATAGAGCTAGCTTAGCCTCTACCTG 220
Query 756 TAAGACATGGAGATGTCTTGGTGCTTCTTCTTGTTTGTGGACTTCATTGGATCTTCG-TC 814
||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 221 TAAGACATGGAGAAGCCTTGGTGCTTCTTCTTGTTTGTGGAGTTCATTGGATCTTCGAGC 280
Query 815 CTCACAAGTTTGATGC-TTCAATGGCAGCTTCTCTTGCTTCTAGGTGTGTTAATCTTCAT 873
| |||||||||||| | |||| |||| ||||||||||| ||||||||| | |||||||
Sbjct 281 C-CACAAGTTTGAT-CTTTCAGTGGCGGCTTCTCTTGCAACTAGGTGTGCTGATCTTCAG 338
Query 874 TA-CTTAAGGTTTCGTGGTGTTGAATCAGCTGATTCCCTTATACATCTCAAAGCTAGGAA 932
| || ||||||||||||||||| || |||||| || | || ||||||||||| ||||
Sbjct 339 AAGATT-AGGTTTCGTGGTGTTGACTCTGCTGATGCCATAATTCATCTCAAAGCAAGGAC 397
Query 933 TCTAATTGAAGTAAGCGGCGACTATTGCAAGAAAATAACTGATGCCACATTGTCAATGAT 992
||| ||||| | ||||||||||| || | ||| || || ||||| |||||||| |||||
Sbjct 398 TCTGCTTGAAATTAGCGGCGACTACTGTAGGAAGATTACAGATGCTACATTGTCTATGAT 457
Query 993 AGTGGCGCGACATGAGGCACTTGAGAGTCTCCAACTTGGACCTGACTTTTGTGAGAGGAT 1052
| ||| || ||||| || |||||||| |||||||||||||| ||||| ||||||| |||
Sbjct 458 TGCGGCACGCCATGAAGCTCTTGAGAGCCTCCAACTTGGACCAGACTTCTGTGAGAAGAT 517
Query 1053 CACTAGTGATGCTATCAA-AGCTGTTGCCTTTTGTTGTCCTAAGCTTAAAAAGCTTCGCC 1111
||||||||||||||| || || | | |||||||| ||||| || || |||||||| ||
Sbjct 518 CACTAGTGATGCTAT-AAGAGTTATAGCCTTTTGCTGTCCAAAACTGAAAAAGCTACGGG 576
Query 1112 TTTCTGGGATTAGAGATGTGACTTCTGAAGCCATTGAAGCTCTGGCCAAGCATTGTCCAC 1171
||||||| || |||||||| |||||||| || |||||| || ||||||| ||||| ||||
Sbjct 577 TTTCTGGCATGAGAGATGTTACTTCTGAGGCAATTGAATCTTTGGCCAAACATTGCCCAC 636
Query 1172 AGCTCAATGATCTCGGGTTCTTAGATTGTCTAAACATTGACGAGGAGGC-TCTGGGAAAA 1230
|||||| |||||| || ||||||||||| || ||||| |||| || || | ||||||||
Sbjct 637 AGCTCAGTGATCTTGGATTCTTAGATTGCCTGAACATCAACGAAGAAGCAT-TGGGAAAA 695
Query 1231 GTTGTATCTGTTCGATACCTCTCTGTTGCTGGGACATCAAACATAAAATGGTCAA-TTGC 1289
|| |||||| |||| |||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 696 GTGGTATCTCTTCGCTACCTCTCTGTTGCTGGGACATCAAACATAAAGTGG-AAAGTTGC 754
Query 1290 ATCAAATAATTGGGATAAGCTTCCGAAATTAACCGGTTTGGATGTCTCGAGGACCGA-CA 1348
|| | |||||||||| ||||||||||| |||| ||||||||||||||| || ||| | ||
Sbjct 755 ATTAGATAATTGGGAGAAGCTTCCGAAGTTAATCGGTTTGGATGTCTCAAGAACC-ACCA 813
Query 1349 TTGGACC-CACCGCAGTTTCTAGGTTCTTGACATCATC-ACAGAGCTTGAAAGTATTGTG 1406
|| |||| | |||||||| ||||| |||| |||||| | ||||||||||||| |||||
Sbjct 814 TT-GACCATATTGCAGTTTCCAGGTTGTTGAAATCATCGA-AGAGCTTGAAAGTTTTGTG 871
Query 1407 TGCTTTAAACTG-TCATGTCCTCGAAGAGGATGAAAGTTTAATCAGCTATAACCGATTCA 1465
|||||||||||| | | | |||||||||||| |||| || | ||||| || ||||||
Sbjct 872 TGCTTTAAACTGCCCTTAT-CTCGAAGAGGATAAAAG-TT-A-CAGCTCCAATAGATTCA 927
Query 1466 AAGGAAAAGTCTTACTTGCTCTGTTTACTAATGTTTTTGATGGA-CTTGCTTCTATATTC 1524
||||||| |||||||||||| |||||||| || ||||||| || || |||||||||||
Sbjct 928 AAGGAAAGGTCTTACTTGCTATGTTTACTGATACTTTTGAT-GAGCTAGCTTCTATATTT 986
Query 1525 GCCGATAA-TACAAAGAAACCAAAGGATATCTTTGCCTATTGGAGAGAATTGATGAAAAC 1583
|||||||| | ||||||||||||||||||| ||| | || ||||||| ||| ||| ||
Sbjct 987 GCCGATAACT-CAAAGAAACCAAAGGATATGTTTTCTTACTGGAGAG-ATT--TGATAA- 1041
Query 1584 AACCAAGGATAAAA-CAATTAATGACTTTATACATTGGATCGAATGGATTATCTCTCATA 1642
| |||||||||| | | | | || | || | |||||| || ||||| || |||||||
Sbjct 1042 GA--AAGGATAAAAGC-ACTGACGAAATAATGCTTTGGATTGAGTGGATCATTTCTCATA 1098
Query 1643 CGCTTCTACGAACTGC--AGAG-TGTAATCCAGAAGGATTGGATGATTTCTGGCTGAATG 1699
|||||||||||| ||| |||| | ||| || |||||| | |||||||||||||||
Sbjct 1099 CGCTTCTACGAATTGCAGAGAGCAGCAATTCACCAGGATTAAACGATTTCTGGCTGAATC 1158
Query 1700 AAGGAGCCGCATTGCTGCTTAATTTAATGCAAAGCTCACAGGAAGATGTCCAGGAGAGAT 1759
| || || | ||||| || | ||||||||||||| |||| || |||||||| ||||||
Sbjct 1159 AGGGGGCTACGTTGCTTCTCAGTTTAATGCAAAGCGCACAAGAGGATGTCCAAGAGAGAG 1218
Query 1760 CAGCTACTGGGCTTGCAACTTTTGTAGTTGTTGATGATGAGAATGCTAGTATAGACTGTG 1819
|||| || || ||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1219 CAGCCACAGGACTTGCGACTTTCATTGTTGTTGATGATGAGAATGCTAGTATAGACTGTG 1278
Query 1820 GAAGAGCTGAAGCAGTTATGAAAGATGGAGGTATTCGCCTTCTTCTAGAACTTGCGAAAT 1879
||||||| ||||| |||||| ||||||||| || || ||||||||||||||||| ||||
Sbjct 1279 GAAGAGCCGAAGCTGTTATGCGAGATGGAGGGATCCGTCTTCTTCTAGAACTTGCTAAAT 1338
Query 1880 CATGGCGAGAAGGGCTTCAGTCAGAAGCTGCAAAGGCTATTGCAAATTTGTCGGTAAATG 1939
| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1339 CTTGGCGAGAAGGTCTTCAATCAGAAGCTGCAAAGGCTATTGCAAACTTGTCGGTAAATG 1398
Query 1940 CTAATA-TTGCAAAGTCTGTTGCTGAAGAAGGAGGAATCAAAATTCTTGCTGGTTTGGCA 1998
|||| | |||||||| ||||||||||||||||||| |||| ||||||||| |||||||
Sbjct 1399 CTAA-AGTTGCAAAGGCTGTTGCTGAAGAAGGAGGGATCAGTGTTCTTGCTGATTTGGCA 1457
Query 1999 AAGTCAATGAACAGACTTGTGGCTGAGGAAGCTGCTGGTGGACTATGGAATCTCTCTGTC 2058
||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1458 AAGTCTATGAATAGACTTGTGGCTGAAGAAGCTGCTGGTGGGCTATGGAATCTCTCTGTT 1517
Query 2059 GGAGAAGAGCATAAGAATGCTATTGCTCAGGCTGGAGGAGTGAAGGCACTGGTCGACCTT 2118
||||||||||||||||| || |||||||| |||||||||||||| || | || || |||
Sbjct 1518 GGAGAAGAGCATAAGAACGCGATTGCTCAAGCTGGAGGAGTGAATGCGTTAGTTGATCTT 1577
Query 2119 ATATTTAGATGGCCAAATGGCTGTGATGGAGT-CTTGGAACGAGCTGCAGGAGCATTAGC 2177
|| ||||||||||||||||| ||||||||||| || |||||| ||||| || ||||||||
Sbjct 1578 ATCTTTAGATGGCCAAATGGTTGTGATGGAGTTCT-GGAACGTGCTGCTGGGGCATTAGC 1636
Query 2178 AAACTTAGCAGCAGATGATAAATGCAGCATGGAAGTCGCAAAAGCGGGAGGCGTACATGC 2237
||| ||||||||||| ||||||||||||| |||||| |||| ||| ||||| || |||||
Sbjct 1637 AAATTTAGCAGCAGACGATAAATGCAGCACGGAAGTTGCAAGAGCAGGAGGTGTGCATGC 1696
Query 2238 CCTTG-TGATGTTGGCTCGGAATTGCAAGTACGAGGGAGTGCAAGAACAGGCTGCTCGTG 2296
| ||| ||||| | ||||||||||||||||| || |||| ||||||||||| |||||||
Sbjct 1697 C-TTGGTGATGCTAGCTCGGAATTGCAAGTATGAAGGAGCACAAGAACAGGCGGCTCGTG 1755
Query 2297 CTTTAGCTAATTTGGCTGCTCATGGAGATAGCAACAATAATAATGCTGCGGTTGGGCAAG 2356
|||| |||||| | ||||||||||| |||||||| ||||||||||||| ||||| ||||
Sbjct 1756 CTTTGGCTAATCTAGCTGCTCATGGTGATAGCAATGATAATAATGCTGCTGTTGGACAAG 1815
Query 2357 AAGCAGGTGCATTAGAAGCTCTTGTCCAACTTACAAAATCGCCTCATGAAGGAGTTAGAC 2416
| || |||||||| ||||||||||| || ||||| |||||||||||||||| |||| ||
Sbjct 1816 AGGCTGGTGCATTGGAAGCTCTTGTTCAGCTTACGCAATCGCCTCATGAAGGTGTTAAAC 1875
Query 2417 AAGAAGCTGCTGGTGCTCTATGGAATTT-GTCGTTTGATGATAAGAATCGAGAATCTATC 2475
| ||||||||||| ||||| |||||||| | | |||||||| |||||||||||||| ||
Sbjct 1876 AGGAAGCTGCTGGGGCTCTTTGGAATTTAG-CATTTGATGACAAGAATCGAGAATCCAT- 1933
Query 2476 T-CTGTAGCTGGTGGTGTTGAAGCTTTGGTGGCGCTCGC-ACAGTCTTGTTCAAATGCAT 2533
| ||| | ||||||||||||||| |||||||| || || | |||| | |||||||||||
Sbjct 1934 TGCTGCATTTGGTGGTGTTGAAGCCTTGGTGGCACTTGCGA-AGTCCTCTTCAAATGCAT 1992
Query 2534 CGACAGGTCTTCAAGAAAGAGCTGCTGGTGCACTTTGGGGATTATCGGTGTCAGAAGCAA 2593
| |||||||| ||||| ||||| |||||||| || |||||| |||| || ||||||||||
Sbjct 1993 CCACAGGTCTACAAGAGAGAGCAGCTGGTGCTCTCTGGGGACTATCTGTCTCAGAAGCAA 2052
Query 2594 ACAGCGTTGCGATTGGACGTGAAGGTGGGGTTCCACCTCTAATTGCACTTGCACGGTCTG 2653
||||| |||| ||||| | ||||||||| | || ||||||||||| |||||||| || |
Sbjct 2053 ACAGCATTGCAATTGGCCATGAAGGTGGTATCCCGCCTCTAATTGCTCTTGCACGATCCG 2112
Query 2654 AAGCCGAGGATGTACATGAAACTGCAGCAGGAGCTCTATGGAATCTTGCTTTTAATCCTG 2713
|||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 2113 AAGCTGAGGATGTACATGAAACTGCTGCAGGAGCTCTGTGGAATCTTTCTTTTAATCCTG 2172
Query 2714 GTAATGCACTCCGCATTGTTGAGGAAGGAGGAGTTCCAGCTCTTGTTCACTTGTGTTCGT 2773
||||||| || || ||||| |||||||| |||||| ||| ||||||||| | |||||||
Sbjct 2173 GTAATGCTCTGCGGATTGTGGAGGAAGGGGGAGTTGTAGCACTTGTTCACCTCTGTTCGT 2232
Query 2774 CTTCTGTCTCAAAAATGGCTCGATTCATGGCTGCATTGGCTTTGGCATACATGTTTGATG 2833
||||||| || ||||||||||| || ||||| ||||| || |||||||||||||||||||
Sbjct 2233 CTTCTGTTTCCAAAATGGCTCGTTTTATGGCCGCATTAGCATTGGCATACATGTTTGATG 2292
Query 2834 GAAGGATGGATGAATATGCTCTGATGATAGGAACTTCTTCATCAGAGAGCACATCGAAAA 2893
|||||||||||||||| || |||||||| ||||| | | || || ||||| ||||
Sbjct 2293 GAAGGATGGATGAATACGCA---ATGATAGGGACTTCAT--TG-GAAAGTACATCTAAAA 2346
Query 2894 ACATTAGCTTAGATGGGGCAAGAAACAT-GGCTCTTAAACACATTGAAGC-TTT-TGTCC 2950
||| |||| |||| || |||| ||| ||||||| ||||||| |||| ||| | ||
Sbjct 2347 GTGTTACCTTAAATGGTGCTAGAA-CATTGGCTCTTGAACACATCAAAGCCTTTATATC- 2404
Query 2951 TAAGTTTTATAGATC-CTCACATATTTGAATCTCCTGTTGTT-TCATCTACCCC-TACTA 3007
|| ||| || || | | || || ||| | || || | || |||||| | || | |||
Sbjct 2405 -AACTTTCATGGAACAC-CAAATCTTTTCAGCTGGTGCT-TTATCATCTGCTCCAT-CTA 2460
Query 3008 TGCTAGCACAAGTCACAGAGAGAGCTCGCATACAAGAAGCTGGCCATTTGAGATGCAGTG 3067
|| || |||||||| |||||| |||||| || | |||||||||||| |||||||||||||
Sbjct 2461 TGTTATCACAAGTCTCAGAGAAAGCTCGAATCCCAGAAGCTGGCCACTTGAGATGCAGTG 2520
Query 3068 GTGCTGAAATTGGAAGATTTGTAACAATGTTGCGCAATCCT-GA-TTCAACACTCAAAGC 3125
|| | ||||||||||||||||| ||||||||||| |||||| | || | |||||| | |
Sbjct 2521 GTTCCGAAATTGGAAGATTTGTTACAATGTTGCGAAATCCTTGTCTT-A-CACTCAGATC 2578
Query 3126 ATGTGCTGCGTTTGCGCTTCTTCAGTTTACAATACCGGGTGGTCGACATGCAATGCATCA 3185
||||| || |||||||||||||||||||||||||| || ||||| || || ||||||||
Sbjct 2579 TTGTGCAGCTTTTGCGCTTCTTCAGTTTACAATACCTGGAGGTCGTCACGCGATGCATCA 2638
Query 3186 CG-TAAGCCTT-ATGCAGAACGGAGGAGAATCGAGATTCCTT-CGTTCTGCAGCTGCTTC 3242
|| || || || |||||||||| |||||| | ||| || || |||||||||||||| |
Sbjct 2639 CGCTA-GC-TTGATGCAGAACGCTGGAGAAGCAAGAGTC-TTGCGTTCTGCAGCTGCAGC 2695
Query 3243 TGCAAAAACGCCTCGTGAAGCTAAGATCTTTACGAAAATTCTCCTACGCAATCTCGAGCA 3302
||| || | |||||||||||| ||||||||| ||||||| | || ||||||||||||||
Sbjct 2696 TGCGAAGATGCCTCGTGAAGCCAAGATCTTTGTGAAAATTGTGCTTCGCAATCTCGAGCA 2755
Query 3303 TCACCAGGCGGAATCTTC 3320
||||||||| ||||||||
Sbjct 2756 TCACCAGGCAGAATCTTC 2773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125589990900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5