BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44920.2
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483621 jgi|Araly1|483621|fgenesh2_kg.4__2681__AT2G44920.2 1177 0.0
> Ahg483621 jgi|Araly1|483621|fgenesh2_kg.4__2681__AT2G44920.2
Length=907
Score = 1177 bits (637), Expect = 0.0
Identities = 736/783 (94%), Gaps = 9/783 (1%)
Strand=Plus/Plus
Query 20 aaaaaaaaaaaaaaTGGTAATTCTCAGCAACGTCTCGTTGTTCTCCTGCTGCAACATCTC 79
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAAAAAAAAATGGTAATTCTCAGCAACGTCTCGTTGTTCTCCTGCTGCAACATCTC 60
Query 80 TCAGAAACCATCTCTCTTTTCTCCGTCTTCTCGTAGTTCTCATTGTCCCATTCGTTGCTC 139
||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 61 TCAGAAACCATCTCTCTCTTCTCCGTCTTCTCGTAATTCTCATTGTCCCCTTCGTTACTC 120
Query 140 ACA-G-----TCACAGGAAGGGAAAGAAGTGGTTACCAGTCCTTTGAGAAGTGTGGTTTG 193
|| | || |||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 121 TCAGGTAACCTCGCAGGAAGGAAAAGAAGTTGTTGTTAGTCCTTTGAGAAGTGTGGTTTG 180
Query 194 GTCATTAGGAGAAGAGGTTTCAAAGAGAAGTCTATTTGCACTTGTCTCTGCTTCTCTCTT 253
||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 181 GTCATTAGGAGAAGAGGTTTCTAAGAGAAGTCTACTTGCTCTTGTCTCTGCTTCTCTCTT 240
Query 254 CTTTGTTGATCCTGCTCTTGCTTTTAAGGGTGGAGGTCCCTATGGTCAAGGAGTCACCAG 313
||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 CTTTGCTCATCCTGCTCTTGCTTTTAAGGGTGGAGGTCCATATGGACAAGGAGTCACCAG 300
Query 314 GGGACAGGACTTATCTGGCAAAGATTTCAGTGGCCAGACTCTTATCAGGCAGGACTTCAA 373
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGACAGGACTTATCCGGCAAAGATTTCAGTGGCCAGACTCTTATCAGGCAGGACTTCAA 360
Query 374 AACGTCCATCCTAAGGCAAGCCAACTTCAAGGGTGCAAAGTTGTTAGGTGCTAGCTTCTT 433
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GACGTCCATCCTAAGGCAAGCCAACTTCAAGGGTGCGAAGTTGTTAGGTGCTAGCTTCTT 420
Query 434 TGATGCAGATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGATGCAGATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTC 480
Query 494 CTTGGCAAATGTAACAAAGGTGAATCTAACGAACGCTAACTTAGAAGGAGCGACTGTTAC 553
||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |||
Sbjct 481 CTTGGCAAACGTAACAAAGGTGAATTTAACGAACGCTAACTTGGAAGGAGCGACTGCTAC 540
Query 554 TGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAGACTTCACTGATGTCCCTCT 613
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 TGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAGACTTCACCGATGTCCCTCT 600
Query 614 AAGAGATGATCAGCGAGTATACCTTTGCAAAGTTGCGGATGGAGTTAACGCGACTACTGG 673
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 601 AAGAGATGATCAACGAGTATACCTTTGCAAAATCGCGGATGGAGTTAACGCGACTACTGG 660
Query 674 GAATGCAACGCGGGACACATTGCTTTGCAACTAAACTATGAAATGTAAAGCTTTGGACTG 733
|||||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 661 GAATGCAACGCGAGACACATTGCTCTGCAACTAAACTGTGAAATCTAAAGCTTTGGACTG 720
Query 734 TGGGAGTCTTCTTCTTATAATTTTTCTTT-GAGATTTGACCATTGGTGAAGCTTTTTGTG 792
| ||||||||||||||||||||||| ||| ||| ||||| ||||| |||||||| |||||
Sbjct 721 TTGGAGTCTTCTTCTTATAATTTTT-TTTCGAGGTTTGAGCATTG-TGAAGCTTGTTGTG 778
Query 793 CAT 795
|||
Sbjct 779 CAT 781
Score = 93.5 bits (50), Expect = 3e-18
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 905 CTACTGGTTTTTGTTTTATTTATTGGTCTGAATCACAAGAATTATTATGACAttttttt 963
|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 849 CTACTGTTTTTTGTTTTATTTATTGGTGTGAATCACAAGTATTATTATGACATTTTTTT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5