BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45000.1 Length=2368 Score E Sequences producing significant alignments: (Bits) Value Ahg483630 jgi|Araly1|483630|fgenesh2_kg.4__2690__AT2G45000.1 3494 0.0 > Ahg483630 jgi|Araly1|483630|fgenesh2_kg.4__2690__AT2G45000.1 Length=2274 Score = 3494 bits (1892), Expect = 0.0 Identities = 2157/2285 (94%), Gaps = 18/2285 (1%) Strand=Plus/Plus Query 41 CCGCAATGTCGGGGTTTCCATTTGGTCAATCCAATTCCGTTGGAGGATTCTCATTCGGAT 100 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 CCGCAATGTCGGGGCTTCCATTTGGTCAATCCAATTCCGTTGGAGGTTTCTCATTCGGAT 60 Query 101 CTTCTTCTGCAACTAATTCCTCTTCTGCTTCATCTACCACTTCTCCGTTATCTTTCTCCT 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTCTTCTGCAACTAATTCCTCTTCTGCTTCATCTACCACTTCTCCGTTATCTTTCTCCT 120 Query 161 TTAACCAATCTTCAAACCCTAGCTCCACCGGATTCGGTTTCGGATCCTCCGTATCATCAA 220 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 121 TTAACCAATCTTCAAACCCTAGCTCCACCGGATTCGGTTTCGGATCCACCGTCTCATCAA 180 Query 221 CTCCTGCTTCCTCCACTACTCCATCGTTTGGATTCGGAGCTTCCTCTACTCCTTCCTTCG 280 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 181 CTCCTGCTTCCTCCACTACTCCATCGTTTGGATTCGGAGCTTCCTCAACTCCTTCGTTCG 240 Query 281 GATTCGGTTCTTCTGCTTCTTCATCGACTCCATCGTTCGGATTCGGATCTTCTGCCTCCG 340 |||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||| Sbjct 241 GATTCGGTTCCTCTGCTTC---ATCGACTCCATCGTTCGGATTCGGATCCTCTTCCTCCG 297 Query 341 TGACTCCTGCTTCCACAACTCCATCGTTTGGATTTGGAACCGCCGCTTCTTCATCTGCTC 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 CGACTCCTGCTTCCACAACTCCATCGTTTGGATTTGGAACCGCCGCTTCTTCATCTGCTT 357 Query 401 CTGCTCCGTCGCTGTTTGGTTCATCTACCACCAATGCTTCTTCAGCTGCTCCTGGTTCTT 460 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 358 CTGCTCCGTCACTGTTTGGTTCATCTACCACCAATGCTTCTTCTGCTGCTCCTGGTTCTT 417 Query 461 CTCCTTTCGGATTTGTAACTTCCTCGGCCTCTTCCACCG-CAACTCCATCGTCATCTCTA 519 ||||||||||||| |||||||| ||||||||||| | || | | || | ||||||| Sbjct 418 CTCCTTTCGGATTCGTAACTTCTTCGGCCTCTTC-AGCGACTGTTTCAGCTTCATCTCCG 476 Query 520 TTTGGAGCTCCCGCTTCTTCCGCCGCAACTCCATCGTCATCTCCATTCGGAGCTGCTCCA 579 ||||||||||||||||||||| | ||||||||||| |||||| |||||||| ||||| Sbjct 477 TTTGGAGCTCCCGCTTCTTCCTCTGCAACTCCATCTTCATCTATTTTCGGAGCGGCTCCG 536 Query 580 GCCAGTGGTTCAACACCTCTCTTTGGATCTTCCCCTTCCTTATTCTCTGCTCCTTCATCT 639 |||||||||||| || ||||||||||||||||| | ||||||||||| |||||||||||| Sbjct 537 GCCAGTGGTTCATCATCTCTCTTTGGATCTTCCTCATCCTTATTCTCCGCTCCTTCATCT 596 Query 640 GCCTCCGCCTCTAATTCTTCTCTCTTCGGAGCATCCTCATCCGCCGCTACTTCAACATCT 699 || |||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 597 GCTTCCGCCTCGAATTCTTCTCTATTCGGAGCATCCTCATCCGCCGCTGCTTCAACATCC 656 Query 700 CCTCTTTTCGGCGCGCCATCATCAGCCACCGGCGCAACACCGTCCTTTAGCGTGGCCTCA 759 ||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||| Sbjct 657 CCTCTTTTCGGTGCGCCAGCATCAGCCACCGGCTCGACACCGTCCTTTAGCGTGGCCTCA 716 Query 760 TCAGCACCTGGCTCCTCATCATCCATCTTTGGAGCTACCGGCTCGTCACCTTCCTTCAGT 819 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 717 ---GCACCTGGCTCATCATCATCCATCTTTGGAGCCACTAGCTCGTCACCTTCCTTCAGT 773 Query 820 GTTGCCTCATCAGCCTCTGGCTCCTCACCGTCAATCTTTGGAGCTACCGGTTCTTCACCG 879 ||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||| Sbjct 774 GTTGCCTCATCAGCCTCTGGCTCATCACCGCCAATCTTTGGAGCCACCGGTTCGTCACCG 833 Query 880 T---TCTTTGGTTCGTCTTCTTCAGCCGGTTCAACTCCGTCTCTCTTTGCATCTTCCTCG 936 | |||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||| Sbjct 834 TCAATCTTCGGTTCGTCTTCGTCAGCCGGTTCAACTACGTCTCTCTTTGCATCGTCCTCG 893 Query 937 TCAGGCGCAACAACTTCTTCACCATCCCCGTTTGGAGTATCCACCTTCAATTCCTCATCT 996 |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 894 TCAGGCACAACAGCTTCTTCACCATCCCCGTTTGGAGTATCCACCATCAATTCCTCAACT 953 Query 997 ACATCCAATACCTCGAATGCCTCAGCTTCTCCATTCTCCGCTTCTACCGGGTTCTCTTTC 1056 || ||||| ||||| ||||||||||||||| |||||||||||||| || ||||||||| Sbjct 954 GCAACCAATCCCTCGCCTGCCTCAGCTTCTCCTTTCTCCGCTTCTACTGGATTCTCTTTC 1013 Query 1057 TTGAAAAGCACTGCAAGTTCGACCACCAGCTCCACCACTCCTTCTGCTCCTCCACAAACG 1116 ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1014 TTGAAAAGCACAGCAAGTTCGACCACCAGCACCACCACTGCTTCTGCTCCTCCACAAACG 1073 Query 1117 GCTTCATCTTCGTCCTCCTTCTCATTTGGTACATCCGCCAATTCAGGTTTTAACCTTTCA 1176 ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1074 GCTTCATCTTC-T--TCCTTCTCATTTGGTACATCCGCGAATTCAGGTTTTAACCTTTCA 1130 Query 1177 ACCGGAAGCTCCGCAGCACCTGCATCTAGCACATCCGGAGCAGTGTTTTCCATTGCAACC 1236 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1131 ACCGGAAGCTCCGCAGCACCTGCATCCAGCACATCCGGAGCAGTGTTTTCTATTGCAACC 1190 Query 1237 ACCACTACTACTTCTTCTTCGACTCCGGCTGCTACTAGTGCACCAGCTTCTTCAGCTCCC 1296 ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1191 ACCACCACCACTTCTTCTTCGACTCCGGCTGCCACTAGTGCACCAGCTTCTTCAGCTGCA 1250 Query 1297 GCTTCTACAATGGCTTTCCCTTCTTTTGGTGTGACTTCATCTGCAACCAACACCACTCCG 1356 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1251 GCTTCTACAATGGCTTTCCCTTCTTTTGGTGTGAGTTCATCTGCAACCAACACCAGTCCG 1310 Query 1357 GCTAGCTCCGCTGCTACATTCAGTACTACAGGATTTGGTTTGGCTAGCTCGACTCCTGCC 1416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1311 GCTAGCTCCGCTGCTACATTCAGTACTACAGGATTTGGTTTGGCTAGCTCGACTCCTGCC 1370 Query 1417 ACTGGATCTACGAACTCTTTTACTGGGTTTGCTGTACCGAAGACATCAACACCTGCATCA 1476 ||||||||||| || ||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1371 ACTGGATCTACTAAGTCTTTTATTGGGTTTGCTGTACCGCAGACATCAACACCTGCATCA 1430 Query 1477 TCTTCACAACCACAAACTACTAGTCCTGCATTCTCATTCAGTCTCCCATCTTCGACTTCT 1536 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1431 TCTTCACAACCACAAACTACTAGTCCTGCATTCTCATTCAGTCTTCCATCTTCGACTTCT 1490 Query 1537 ACTACTGCTCCTGCTACTAGTTCTGCTACTACAACACAGACAACTCTTGTTGTTCCTTCA 1596 ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 1491 ACTACTGCTCCTGCTACTACTTCTGCTACTACAACACAGACATCTCTTGTTGTGCCTTCG 1550 Query 1597 AGTAGTGGGACGAGCACAGCTGTTGCTCCAGTGGCTGGTTCTCCAAAGTTGCCATCTGAA 1656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1551 AGTAGTGGGACGAGCACAGCTGTTGCTCCAGTGGCTGGTTCTCCAAAGTTGCCATCTGAA 1610 Query 1657 ATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTACAAGAGCGC 1716 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 ATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTACAAGAGCGT 1670 Query 1717 ACAGGGAGATTCCGGAAACAGGCAAATGCAATAGCAGAGTGGGATAAGCGGATCTTGCAA 1776 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1671 ACAGGGAGATTCCGGAAACAGGCAAATGCAATTGCAGAGTGGGATAAGCGGATCTTGCAG 1730 Query 1777 AACCGTGATGTTCTTTTGAGACTTGAGATTGAAGTTGCAAAAGTGGTTGAAACCCAATCT 1836 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1731 AACCGTGATGTTCTTTTGAGGCTTGAGATTGAAGTTGCAAAAGTGGTTGAAACCCAATCT 1790 Query 1837 AGCTTGGAACGACAGCTGGAATTAATCGAGACTCATCAGCAAGAGGTTGACAAGGCTTTG 1896 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1791 AGCTTGGAACGACAGTTGGAATTAATCGAGACTCATCAGCAAGAGGTTGACAAGGCTTTG 1850 Query 1897 CAAAGCATGGAGGAAGAGGCTGAGCGTATATATAATGACGAGCGGAAATCACTTCTGGAC 1956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1851 CAAAGCATGGAGGAAGAGGCTGAGCGTATATATAATGACGAGCGGAAATCACTTCTTGAC 1910 Query 1957 GATGAAGCAGCATCAACTAGAGATGCAATGTATGAACAGTCTGAGCTAGTAGAAAGAGAA 2016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1911 GATGAAGCAGCATCAACTAGAGATGCAATGTATGAACAGTCTGAGCTAGTAGAAAGAGAA 1970 Query 2017 CTGGAGCATATGACTGAACAAATCAGATCGATTATACAATCCGTAAATGCAAACCAGGGT 2076 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1971 TTGGAGCATATGACTGAACAAATCAGATCGATTATACAATCCGTAAATGCAAACCAGGGT 2030 Query 2077 GGAGAACTTGAAGCGATAGATGGGATGAGTCCACTTGATGTAGTTGTCAGAATCTTGAAC 2136 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2031 GGAGAACTTGAAGCAATAGATGGGATGAGTCCACTGGATGTAGTTGTCAGAATCTTGAAC 2090 Query 2137 AATCAACTCAGTTCCTTAATGTGGATTGATGAGAAAGCAGAGGAATTCTCTTCTCGGATT 2196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2091 AATCAACTCAGTTCCTTAATGTGGATTGATGAGAAAGCAGAGGAATTCTCTTCTCGGATT 2150 Query 2197 CAAAAAATCGCAT-TGCAAGGTTCGGGTGGAGATCGTGAATTGATGGCTCCAAAGCACTG 2255 || |||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2151 CAGAAAATCGCATCT-CAAGGTTCTGGTGGAGATCGTGAATTGATGGCTCCAAAGCACTG 2209 Query 2256 GATGTCTTGATAAGAATTACAAAAAC-CA-CATAATCTCAGGAAATGGATTATCTTCTTG 2313 |||||||||||| |||||| |||| | || ||| | ||||||||| | |||||||||||| Sbjct 2210 GATGTCTTGATATGAATTATAAAATCACATCATCAGCTCAGGAAACGAATTATCTTCTTG 2269 Query 2314 TAGTT 2318 ||||| Sbjct 2270 TAGTT 2274 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89207353790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5