BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45160.1 Length=2289 Score E Sequences producing significant alignments: (Bits) Value Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1 3024 0.0 Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1 573 2e-162 > Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1 Length=2185 Score = 3024 bits (1637), Expect = 0.0 Identities = 2019/2191 (92%), Gaps = 76/2191 (3%) Strand=Plus/Plus Query 105 TTGTTGAGGAGGCGATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTT 164 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56 TTGTCGAGGAGGCGATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTT 115 Query 165 TATCTTCTTCTTCTTTCTATTCAGATTCTCAGAAAATCTGGTCCAATCAAGACAAAACCG 224 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 116 TA---TCTTCTTCTTTCTATTCAGATTCTCCTAAAATCTGGTCCAATCAAGACAAAACCG 172 Query 225 AAGCAAAACAAGAAGATCTTGGTTATGTTGTCGGTGGTTTTTTACCGGAGCCGACGTCTG 284 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 173 AAGCAAAAC---AAGATCTTGGTTATGTTGTCGGTGGTCTTTTACCGGAGCCGACGTCTG 229 Query 285 TTCTCGACGCTCTAAGAAGTCCTAGTCCTCTCGCTTCTTATTCTTCTACCACCACCACGC 344 ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 230 TTCTCGACGCTTTAAGGAGTCCTAGTCCTCTCGCTTCTTATTCTTCTACAACCACCACGC 289 Query 345 TGTCTTCCTCTCACGGCGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTG 404 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 TGTCTTCCTCTCA---CGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTG 346 Query 405 ATGATAACAATAACAATAAATGTAGTCAGATGGGTTTGGATGATCTTGACGGTGTTCTCT 464 ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 347 ATGAT---AATAATAATAAATGTAGTCAGATGGGTTTGGATGATCTTGATGGTGTTCTCT 403 Query 465 CTGCTTCTTCTCCTGGTCAAGAGCAGAGTATCTTGAGACTTATCATGGACCCGGGTTCTG 524 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 404 CTGCTTCTTCTCCTGGTCAAGAACAGAGTATCTTGAGACTTATCATGGACCCGGGTTCTG 463 Query 525 CCTTCGGTGTTTTCGACCCGGG-TTTCGGATTCGGGTCTGGTTCCGGGCCTGTGTCTGCT 583 ||||||||||| |||||||| ||| ||||||||||||||||||||||| || || Sbjct 464 GATTCGGTGTTTTTGACCCGGGCTTT-GGATTCGGGTCTGGTTCCGGGCC--TG--TG-- 516 Query 584 CCGGTGAGTGATAATTCGAAT-CTTCTGTGTAACTTCCCGTTTCAAGAGATTACGAATCC 642 ||||||| ||| ||||||||| ||| |||||| ||||||||||||||||||| ||||||| Sbjct 517 CCGGTGACTGAAAATTCGAATCCTT-TGTGTAGCTTCCCGTTTCAAGAGATTGCGAATCC 575 Query 643 AGCAGAAGCTTTGATCAATCCTTCAAATCATTGCCTGTTCTATAATCCTCCGTTATCTCC 702 |||||||||||||||||||||| ||||||| || |||||| ||||||||| |||||||| Sbjct 576 AGCAGAAGCTTTGATCAATCCTACAAATCACTGTTTGTTCTCTAATCCTCCATTATCTCC 635 Query 703 ACCGGCTAAACGGTTTAATTCCGGATCTCTTCATCAACCCGTTTTCCCTTTATCGGATCC 762 |||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 636 ACCGGCGAAACGGTTTAATTCCGGATCTCTTCATCAACCCATTTTCCCTTTCTCGGATCC 695 Query 763 GGATCCGGGTCACGACCCGGTTCGTCGTCAACATCAGTTTCAGTTTCCGTTT---TATCA 819 ||||||||||||||||||||||||||| || || |||||||||||||||||| | ||| Sbjct 696 GGATCCGGGTCACGACCCGGTTCGTCGGCAGCACCAGTTTCAGTTTCCGTTTCCGTTTCA 755 Query 820 -CAACAACCAGCAACAACAATTCCCGTCGTCTTCTTCTTCCACGGCGGTGGCTATGGTTC 878 | ||||||||||||||||| | | |||||||||| | |||||||||||||||||| Sbjct 756 TC-ACAACCAGCAACAACAAAT---GCCGTCTTCTTC-T--GCGGCGGTGGCTATGGTTC 808 Query 879 CGGTTCCGTCGCCGGGAATGGCCGGCGATGACCAGTCAGTCATCATCGAGCAGCTGTTCA 938 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 809 CGGTTCCGTCTCCGGGAATGGCCGGCGATGACCAGTCAGTCATCATCGAGCAGCTGTTCA 868 Query 939 ACGCGGCGGAGCTAATCGGAACCACCGGAAACAAC---AACGGCGACCACACCGTTCTCG 995 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 869 ACGCGGCGGAGCTAATCGGAGCCACCGGAAACAACAATAACGGCGACCACACCGTTCTCG 928 Query 996 CGCAAGGGATATTGGCGCGGCTCAATCACCATCTCAACACTAGTAGTAACCACAAGTCTC 1055 ||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||||| Sbjct 929 CGCAAGGGATATTGGCGCGGCTCAATCACCATCTC-A-AC-AGTAGTAACCATAAGTCTC 985 Query 1056 CGTTTCAAAGAGCAGCTTCTCACATCGCTGAAGCTCTCCTCTCACTCATCCACAACGAAT 1115 | ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 986 CTTTTCAAAGAGCGGCTTCTCACATCGCTGAAGCTCTCCTTTCAATCATCCACAACGACG 1045 Query 1116 CATCACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCT 1175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 CATCACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCT 1105 Query 1176 TCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGCGAATCAATCGATTCTTG 1235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 TCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGCGAATCAATCGATTCTTG 1165 Query 1236 AGTCCTGCAACGAATCAGGGTTTGATCGGATCCACATTATCGATTTCGACGTTGGATATG 1295 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1166 AGTCCTGCAACGAATCAGGGTTTGATCGAATCCACATTATCGATTTCGACGTTGGATATG 1225 Query 1296 GAGGACAATGGTCGTCTCTAATGCAAGAACTCGCTTCCGGAGTTGGAGGAAGAAGAAGAA 1355 ||||||||||||| |||||||||||||||||||| |||||| | | | ||||||||| Sbjct 1226 GAGGACAATGGTCATCTCTAATGCAAGAACTCGCCCCCGGAG--G-A--A-GAAGAAGAA 1279 Query 1356 ACAGAGCATCGTCTCTGAAATTAACAGTCTTTGCTCCTCCACCTTCTACAGTCTCCGACG 1415 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1280 ACAGAGCATCATCTCTGAAATTAACAGTCTTTGCTCCTCCTCCTTCAACAGTCTCCGACG 1339 Query 1416 AGTTCGAGCTTCG-TTTCACAGAGGAAAATCTCAAAACATTCGCCGGAGAAGTCAAGATT 1474 |||||||||| || ||| || ||||||||||||||||| || |||||||||||||||||| Sbjct 1340 AGTTCGAGCTCCGATTT-ACGGAGGAAAATCTCAAAACTTTTGCCGGAGAAGTCAAGATT 1398 Query 1475 CCTTTCGAAATCGAGTTACTAAGCGTAGAGCTTCTTCTAAACCCAGCTTATTGGCCACTC 1534 || ||||| |||||||| |||||| | |||||||||||||||||| |||||||||||||| Sbjct 1399 CCGTTCGAGATCGAGTTGCTAAGCATCGAGCTTCTTCTAAACCCATCTTATTGGCCACTC 1458 Query 1535 TCTCTACGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCC 1594 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1459 TCTCTCCGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCCGTAAACTCCGTCGCC 1518 Query 1595 TCCGGTTACCTTCCGTTAATCCTCCGATTCCTTAAACAACTATCACCAAACATCGTCGTT 1654 |||||||||||||| ||||||||||| ||||| |||||| | ||||||||| |||||||| Sbjct 1519 TCCGGTTACCTTCCATTAATCCTCCGTTTCCTCAAACAAATCTCACCAAACGTCGTCGTT 1578 Query 1655 TGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCAGTGATTCATTCG 1714 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 1579 TGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCCGTGATCCACGCG 1638 Query 1715 CTTCAATACCACACTTCTCTGCTTGAGTCTCTTGATGCTAATCAGAACCAGGACGATTCG 1774 ||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1639 CTTCAGTACCACACTAGTCTGCTTGAGTCTCTGGATGCTAATCAGAACCAAGACGATTCA 1698 Query 1775 AGTATCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGT 1834 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1699 AGTATCGAGAGGTTTTGGGTTCAACCATCGATTGAGAAGCTGTTGATGAAACGACACCGT 1758 Query 1835 TGGATTGAAAGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCG 1894 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1759 TGGATTGAAAGATCTCCACCGTGGAGAAGCTTGTTTACACAATGTGGGTTTTCTCCGGCG 1818 Query 1895 AGTTTGAGTCAGATGGCGGAAGCTCAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGA 1954 ||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1819 AGTATGAGTCAGACGGCGGAGGCTCAGGCGGAGTGTTTGTTGCAGAGGAATCCGGTGAGA 1878 Query 1955 GGGTTTCACGTTGAGAAAAGGCAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTT 2014 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1879 GGGTTTCACGTTGAGAAAAGACAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTT 1938 Query 2015 GTTACTGTCTCTGCTTGGAAATGTTAGACGAAGAAGAAACCACAAATCTCTCTCTCGCTT 2074 |||||||||||||||||||||| | | | |||||||||||||| Sbjct 1939 GTTACTGTCTCTGCTTGGAAAT---A-A--A--------CCACAAATCTCTCTA------ 1978 Query 2075 AGCTAATTTCTCTGTTTTT-CTTTGTCAGATTTTAAAA-T-GTT-GTTATGTTGTTCAAT 2130 |||||||||||||| |||| |||| |||||||||||| | ||| ||||||||||||||| Sbjct 1979 AGCTAATTTCTCTGCTTTTGCTTTTTCAGATTTTAAACGTCGTTCGTTATGTTGTTCAAT 2038 Query 2131 GATGTTCTTAGTTTCGAGACTGTTG-TGTTTTAACATTTTAAGGAAGTCAGAATATATAA 2189 | ||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||| Sbjct 2039 GGTGTTCTTAGTTTCGA--CT-TTGGTGTTTTAACATTTTAAGGAAGTCAGGATATATAA 2095 Query 2190 TCAAAATCTCCTTTTGTTAGATTTTATTTTGCTCTTTTTGAGTTTATGCATAAATCTCTT 2249 ||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||| Sbjct 2096 TCAAAATCTCCTTTTGTTAGACTTTATTTTGCTCTTTTGG-GTCAATGCATAAATCTCTT 2154 Query 2250 GTCCAAAAACAGAAATTGTTAAAGAGATATG 2280 |||||||||||||||||| ||||||||||| Sbjct 2155 ATCCAAAAACAGAAATTGTAAAAGAGATATG 2185 > Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1 Length=2195 Score = 573 bits (310), Expect = 2e-162 Identities = 866/1120 (77%), Gaps = 95/1120 (8%) Strand=Plus/Plus Query 987 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCATCTCAACA-CTA-GT-AGTA 1043 |||||||||||||||||||||||||||||||||||||| | || |||| | | | | || Sbjct 1001 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACAACCTTAACAACAACGACACTA 1060 Query 1044 ACCACAAG--T---C-TCCGTTTCAAAGAGCAGCTTC-TCACATCGCTGAAGCTCT-C-C 1094 || |||| | | |||||||| ||||||||||| | | || | |||||||| | | Sbjct 1061 ACAACAATCCTAAACCTCCGTTTCGTAGAGCAGCTTCGT-ATATAACCGAAGCTCTTCAC 1119 Query 1095 TCTCA-CT-CATC-CACAACGAATCATCACCACCGT-TAA-TCACG-CCGGAGAATCTGA 1148 |||| || || | || | | ||||||||||||| | |||| || | || || | Sbjct 1120 TCTCTTCTTCAAGACTCATC-A-TCATCACCACCGTCTCTCTCACCTCCTCAAAACCTAA 1177 Query 1149 T-TCTCCGAATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTT 1207 | | || ||||||| ||||||||| | ||||| ||||| || |||||||| |||||||| Sbjct 1178 TCTTTC-GAATCGCAGCTTACAGAGCTTTCTCGGAAACGTCACCGTTTCTTCAATTCGTC 1236 Query 1208 AACTTCACAGCGAATCA-ATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGGAT 1266 || |||||||| || || | ||||||||||||||| | ||| || |||||||| || Sbjct 1237 AATTTCACAGCAAACCAGA-CGATTCTTGAGTCCTTC---GAA---GGATTTGATCGAAT 1289 Query 1267 CCACATTATCGATTTCGACGTTGGATATGGAGGACAATGGTCGTCTCTAATGCAAGAACT 1326 ||||||| |||||||||| | || || ||||| |||||| ||||||| || ||||| || Sbjct 1290 CCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCGTCTCTGATTCAAGAGCT 1349 Query 1327 CGCTTCCGGAGTTGGAGGAAGAAGAAGAAACAG--AGCATC-GTCTCTGAA-ATTAACAG 1382 ||| | ||| || || | || | | ||| || ||| || || |||| ||| Sbjct 1350 CGC--C-GGAAAAAGA--AACA-GATCTT-C-GTCAGC-TCCGTCGCTAAAGATTA-CAG 1399 Query 1383 TCTTT-GCTCCTCCACCTTCTACAGTCTCCGACGAGTTCGAGCTTCGTTTCACAGAGGAA 1441 |||| ||| |||| ||| || ||||||||||| |||||||| || ||||| || ||| Sbjct 1400 -CTTTCGCTTCTCC---TTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAAGAA 1455 Query 1442 AATCTCAAAACATTCGCCGGAGAAGTCA-AGAT-TCCTTTCGAAATCGAGTTACT--AAG 1497 ||||||| || ||||| |||||| | || | ||||| |||||||||| | || || Sbjct 1456 AATCTCAGAAGTTTCGCTGGAGAAACCGGAG-TCTCCTT-CGAAATCGAGCT-CTTGAA- 1511 Query 1498 CGTAGAGCTTCTTCTA-AACCCAGCTTATTGGCCACTCTCTCTAC---GTTCATCGGAAA 1553 | | ||| |||| || || ||| ||||||||||||||||| ||| | |||||||| | Sbjct 1512 CATGGAGATTCT-CTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGAGA 1570 Query 1554 AAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCCTCCGGTTACCTTCCGTTAA 1613 |||||||||| || |||||||||||| | | |||| | | |||||||||||| || || | Sbjct 1571 AAGAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATTGA 1630 Query 1614 TCCTCCGATTCCTTAAACAACTATCACCAAACATCGTCGTTTGCTCAGACAGAGGATGTG 1673 | || || ||||| || ||| | ||||||||| |||||||||||||||| ||| | || | Sbjct 1631 TACTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTGCG 1690 Query 1674 ACCGTAAC---GACGCGCCGTTTCCAAACGCAGTGATTCATTCGCTTCAATACCACACTT 1730 |||| ||| ||||||||||| || |||| |||||| | |||| || ||| |||| | Sbjct 1691 ACCGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACACAT 1750 Query 1731 CTCTGCTTGAGTCTCTTGA-TGCT---AATCAGAACCA-G-G-A--C-GATTCGAGTATC 1780 ||||||| |||||||| || | || |||| ||| | | | | | | ||||||||| Sbjct 1751 CTCTGCTCGAGTCTCTCGACT-CTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTATT 1809 Query 1781 GAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGTTGGATT 1840 ||||||||||| || ||||| |||||| |||| ||||||| ||| || |||||||||| Sbjct 1810 GAGAGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGAT- 1868 Query 1841 GAA-AGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCGA-GTT 1898 | | ||||| || |||||||||| ||||||| ||||||||||||||||||| || | | Sbjct 1869 GCAGAGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACGCT 1928 Query 1899 TGAGTCAGATGGCGGA-AGCTCAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGAGGG 1957 |||||||| |||||| | | |||||||||| |||||||||||| |||||| |||||||| Sbjct 1929 -GAGTCAGACGGCGGAGA-CACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAGGG 1986 Query 1958 TTTCACGTTG-AGAAAAG---G-CA--GTC-T-T-CACTTGTCATGTGTTGGCAAAGGAA 2007 |||||| ||| |||| || | || ||| | | |||||||| |||||||||| ||||| Sbjct 1987 TTTCAC-TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGGAA 2045 Query 2008 AGAACTTGTTACTGTCTCTGCTTGGAAATGTT-AGACGAA 2046 |||||||||||||||||| ||||||||||||| ||| ||| Sbjct 2046 AGAACTTGTTACTGTCTCAGCTTGGAAATGTTGAGAGGAA 2085 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86198224435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5