BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45180.1 Length=678 Score E Sequences producing significant alignments: (Bits) Value Ahg483654 jgi|Araly1|483654|fgenesh2_kg.4__2714__AT2G45180.1 872 0.0 > Ahg483654 jgi|Araly1|483654|fgenesh2_kg.4__2714__AT2G45180.1 Length=579 Score = 872 bits (472), Expect = 0.0 Identities = 548/584 (94%), Gaps = 7/584 (1%) Strand=Plus/Plus Query 14 TATCTCTCCTTCACATTCATCCCAAAACATTACAAAACGTTACAATGGCTTCTAAGGCTC 73 ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| Sbjct 1 TATCTCTCCTTCACATTCACCCCAAAACATTACAAAAAGTTCCAATGGCTTCTAAGGCTC 60 Query 74 TTGCAGTTACAGCTCTTCTTATTACACTTAATCTTCTTTTCTTCACCTTTGTAACCTCCA 133 |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 61 TTGCAGTTACTGCTCTTCTTATTACCCTTAATCTTCTTTTCTTCACCTTTGTTACCTCCA 120 Query 134 CAAAATGTCCACCAACTACTCCTAAACCCCCAAAAACCCCGAAATCGCCTAAGAAGGCTC 193 ||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||| || Sbjct 121 CAAAATGTCCACCAACTACTCCTAAACCCCCAAAAGTCCCTAAATCCCCAAAGAAGGATC 180 Query 194 CTGCCGTGAAACCCACTTGTCCTACCGACACACTTAAGCTTGGTGTTTGCGCAGACTTAT 253 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 181 CTGCCGTTAAACCCACTTGTCCTACCGACACACTTAAGCTCGGTGTTTGCGCAGACTTAT 240 Query 254 TGGGCCTAGTTAACGTTGTTGTTGGTTCTCCACCAAAGACTCCTTGTTGTACACTTCTTC 313 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGGGCCTGGTTAACGTTGTTGTTGGTTCTCCACCAAAGACTCCTTGTTGTACACTTCTTC 300 Query 314 AAGGTCTTGCTAATCTTGAAGCTGCGGTTTGTCTCTGCACCGCTCTTAAAGCCAATGTCT 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAGGTCTTGCTAATCTTGAAGCTGCGGTTTGTCTCTGCACCGCTCTTAAAGCCAATGTCT 360 Query 374 TGGGGATTAATCTCAATGTTCCTATTGATCTAACCTTGCTGTTGAACTATTGTGGCAAGA 433 ||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||| Sbjct 361 TGGGGATTAATCTCAATGTTCCTGTTGATCTGAGCTTGCTATTGAACTATTGTGGCAAGA 420 Query 434 AAGTTCCTCATGGTTTCCAATGTTCTTGAAGATTTGAGACTTTAAAAGAGAAAAATCTCT 493 || ||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||| Sbjct 421 AACTTCCTTATGGTTTCCAATGTGCTTGACGATTTGAGACTT-AAAAGAGAAAAATCTCT 479 Query 494 TTGGTTTGCTATGTTTTTATATGTTTGTTTCTACTGTTATCTATTGTTTTTGTGAGAAAA 553 || || || |||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 480 TT--TT-GCAATGTTTTTATTTGTTTGTTTCTACTGGTATCTATTGTTTTTGTGAGAAAA 536 Query 554 AGC-TTTGTT-CTGTCACTGTTGAGTTTGATGTAATGCTTGAGC 595 | | |||||| || ||| | |||||||||||||||||||||||| Sbjct 537 AACCTTTGTTTCTCTCA-TATTGAGTTTGATGTAATGCTTGAGC 579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24894264801 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5