BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45190.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935472 jgi|Araly1|935472|scaffold_403460.1 1487 0.0
Ahg490550 jgi|Araly1|490550|fgenesh2_kg.6__3684__AT4G00180.1 195 8e-49
> Ahg935472 jgi|Araly1|935472|scaffold_403460.1
Length=864
Score = 1487 bits (805), Expect = 0.0
Identities = 840/857 (98%), Gaps = 1/857 (0%)
Strand=Plus/Plus
Query 7 CCCAACAATCAAGAAGATCAGATCATGGTGGGGTTTTTTATTTTCTCCTTATCAAGAATC 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCAACAATCAAGAAGATCAGATCATGGTGGGGTTTTTTATTTTCTCCTTATCAAGAATC 60
Query 67 CTCTGATCAGTCAAATACCCATCAATCAATCAAATCCCCAAACACTCCCaaaaaaaGATC 126
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CTCTGATCAGTCAAATACCCATCAATCAATCAAATCCCCAAACACTCCC-AAAAAAGATC 119
Query 127 AGCTTCCAATATTTTTCCCCTTCTTACAAAAAAGATGTCTATGTCGTCTATGTCCTCCCC 186
|| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGGTTCCAATTTTTTTCCTCTTCTTACAAAAAAGATGTCTATGTCGTCTATGTCCTCCCC 179
Query 187 TTCCTCAGCTGTTTGTTCACCGGACCACTTCTCTCCTTCCGACCATCTCTGCTATGTCCA 246
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 TTCCTCAGCTGTTTGTTCACCGGACCACTTCTCTCCTTCCGAGCATCTCTGCTATGTCCA 239
Query 247 ATGCAACTTTTGCCAAACCATCCTTGCGGTTAATGTTCCTTACACAAGCTTGTTCAAGAC 306
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 240 ATGCAACTTTTGCCAAACCATTCTTGCGGTTAGTGTTCCTTACACAAGCTTGTTCAAGAC 299
Query 307 CGTAACTGTCCGATGTGGTTGCTGTACCAATCTCCTTTCGGTGAACATGAGATCATATGT 366
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CGTAACTGTTCGATGTGGTTGCTGTACCAATCTCCTCTCGGTGAACATGAGATCATATGT 359
Query 367 CCTCCCAGCTTCTAACCAGCTCCAGCTCCAGCTCGGTCCTCACTCTTACTTCAATCCCCA 426
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 CCTCCCAGCCTCTAACCAGCTCCAGCTCCAGCTCGGTCCTCACTCTTACTTCAACCCCCA 419
Query 427 GGATATTCTGGAGGAGCTGAGAGATGCACCGTCTAACATGAATATGATGATGATGAATCA 486
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GGATATTCTGGAGGAGCTGAGAGATGCACCATCTAACATGAATATGATGATGATGAATCA 479
Query 487 ACATCCTACTATGAATGACATACCATCTTTCATGGATCTTCATCAACAACATGAGATTCC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACATCCTACTATGAATGACATACCATCTTTCATGGATCTTCATCAACAACATGAGATTCC 539
Query 547 TAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAA 599
Query 607 CCGATTCATCAAGGAGGAGATCCAACGTATCAAAGCTGGTAATCCTGATATAAGCCACAG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCGATTCATCAAGGAGGAGATCCAACGTATCAAAGCTGGTAATCCTGATATAAGCCACAG 659
Query 667 AGAAGCCTTTAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCT 726
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAAGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCT 719
Query 727 CGTGCCAGACAATCAACCCGTGAAGAAAACCAACATGCCCCAACAGGAGGGAGAGGATAA 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 CGTGCCAGACAATCAACCCGTGAAGAAAACCAACATGCCCCAACAGGAGGGAGATGATAA 779
Query 787 CATGGTGATGAAAGAAGGGTTCTACGCTCCTGCAGCTGCTAACGTTGGTGTGACTCCTTA 846
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 CATGGTGATGAAAGAAGGTTTCTACGCTCCTGCGGCTGCTAACGTTGGTGTGACTCCTTA 839
Query 847 TTAAAGAGATAAATATA 863
||||||||||| |||||
Sbjct 840 TTAAAGAGATATATATA 856
> Ahg490550 jgi|Araly1|490550|fgenesh2_kg.6__3684__AT4G00180.1
Length=1109
Score = 195 bits (105), Expect = 8e-49
Identities = 182/219 (83%), Gaps = 5/219 (2%)
Strand=Plus/Plus
Query 568 CCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAACCGATTCATCAAGGAGGAGAT 627
||| |||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 739 CCC-CCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAGGAGGAGAT 797
Query 628 CCAACGTATCAAAG-CTGGTAATCCTGATATAAGCCACAGAGAAGCCTTTAGTGCTGCTG 686
||||||||| |||| | || || |||||||| ||||||||||||||||| ||||||||||
Sbjct 798 CCAACGTAT-AAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTG 856
Query 687 CCAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCTCGTGCCAGA-CAATCAACCC 745
|||| || ||||| || ||||| ||||||||||| || ||| || | || || || |||
Sbjct 857 CCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGTCTCATGGCTGATCA-TCCTCCC 915
Query 746 GTGAAGAAAACCAACATGCCCCAACAGGAGGGAGAGGAT 784
||||| | ||| ||| ||||||||| |||||||||
Sbjct 916 ACCAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGAT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5