BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45270.1
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902559 jgi|Araly1|902559|Al_scaffold_0004_3209 2076 0.0
> Ahg902559 jgi|Araly1|902559|Al_scaffold_0004_3209
Length=1407
Score = 2076 bits (1124), Expect = 0.0
Identities = 1261/1328 (95%), Gaps = 5/1328 (0%)
Strand=Plus/Plus
Query 168 TAAGCTTAAAACCAAAACCCCGACTTTCTCGTTAATCTCTCCTTCATCTTCACCCAATTT 227
||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 78 TAAACTTAGAACCAAAATCCCGACTTTCTCCTTAATCTCTCCTTCATCTTCACCCAATTT 137
Query 228 TCAAAGGACACGTTTTTATTCTACCGAAACAAGAAT-T--TCCTCCTTACCCTATAGCGA 284
|||||||||||||||||||||||||| ||||||||| | | ||| |||||| |||||||
Sbjct 138 TCAAAGGACACGTTTTTATTCTACCGGAACAAGAATCTACTACTCGTTACCCAATAGCGA 197
Query 285 AAACCCGAATTTTGATGATAATTTGGTTGTTCTGGGTATTGAAACGAGCTGCGACGACAC 344
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AAATTCGAATTTTGATGATAATTTGGTTGTTCTGGGTATTGAAACGAGCTGCGACGACAC 257
Query 345 TGCCGCAGCTGTTGTGAGAGGTAATGGTGAAATTCTCAGTCAAGTCATTTCTTCTCAGGC 404
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGCCGCAGCTGTTGTGAGAAGTAATGGTGAAATTCTCAGTCAAGTCATTTCTTCTCAGGC 317
Query 405 AGAATTGCTTGTCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCG 464
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AGAATTGCTTGCCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCA 377
Query 465 AGTTATCGATAAGGTTGTGCAAGACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCT 524
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 378 AGTTATCGATAAGGTTGTGCAAGACGCGCTTGATAGAGCCAGTTTGACCGAGAAGGATCT 437
Query 525 CTCTGCTGTTGCTGTTACCATTGGACCTGGTTTGAGCCTCTGTCTACGTGTTGGTGTGCG 584
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 438 CTCTGCTGTTGCTGTTACCATTGGACCTGGTTTGAGCCTCTGTCTACGCGTTGGTGTGCG 497
Query 585 CAAGGCTAGAAGAGTTGCTGGTAACTTCAGTCTCCCAATCGTTGGGGTGCATCACATGGA 644
|||||| | || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 498 AAAGGCTCGTAGCGTTGCTGGTAACTTCAGTCTCCCAATTGTCGGGGTGCATCACATGGA 557
Query 645 GGCTCATGCTCTCGTTGCTAGATTAGTGGAACAAGAATTAAGCTTCCCTTTCATGGCATT 704
||||||||| || || ||||| ||||| || |||||||||||||| || |||||||||||
Sbjct 558 GGCTCATGCCCTTGTAGCTAGGTTAGTAGAGCAAGAATTAAGCTTTCCGTTCATGGCATT 617
Query 705 GCTTATATCAGGAGGGCACAATCTTCTAGTTCTTGCGCATAAGCTTGGTCAGTACACACA 764
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 618 GCTTATATCAGGAGGGCACAATCTGCTAGTTCTTGCGCATAAGCTTGGTCAGTACACACA 677
Query 765 ACTTGGGACTACAGTAGATGATGCTATAGGTGAGGCATTTGACAAGACAGCTAAATGGCT 824
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 678 ACTTGGGACTACAGTAGATGATGCTATAGGTGAGGCATTTGACAAGACAGCAAAATGGCT 737
Query 825 CGGCCTCGATATGCACAGGAGTGGTGGACCAGCTGTTGAAGAACTTGCTCTGGAGGGTGA 884
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CGGTCTTGATATGCGCAGGAGTGGTGGACCAGCTGTTGAAGAACTTGCTCTGGAGGGTGA 797
Query 885 TGCAAAGTCTGTTAAGTTTAATGTTCCAATGAAATATCATAAAGATTGCAACTTTTCTTA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TGCAAAGTCTGTTAAGTTTAATGTTCCAATGAAATATCATAAAGATTGCAACTTTTCTTA 857
Query 945 TGCTGGTTTGAAGACACAAGTGAGGCTAGCCATTGAAGCCAAAGAAATTGATGCTAAATG 1004
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 858 TGCTGGTTTGAAGACACAAGTGAGGCTAGCCATTGAAGCCAAAGAAATCGATGCTAAATG 917
Query 1005 TCCCGTCTCTTCTGCAACAAACGAAGACAGAAGAAACCGTGCTGATATTGCCGCTTCTTT 1064
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 918 TCCTGTCTCTTCTGCAACAAACGAAGACAGAAGAAACCGTGCTGATATCGCCGCTTCTTT 977
Query 1065 CCAGCGAGTAGCTGTCTTGCATCTGGAAGAAAAATGTGAGCGAGCAATAGACTGGGCA-T 1123
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 978 CCAGCGAGTAGCTGTCTTGCATCTGGAGGAAAAGTGTGAGCGAGCAATAGACTGGGCACT 1037
Query 1124 TAGAACTAGAGCCTTCTATTAAACATATGGTAATCTCTGGTGGTGTTGCTTCAAACAAGT 1183
| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1038 T-GAACTCGAGCCTTCTATAAAACATATGGTAGTCTCTGGTGGTGTTGCTTCAAACAAGT 1096
Query 1184 ATGTACGACTCCGACTTAATAACATTGTCGAAAACAAAAACCTGAAACTTGTTTGCCCTC 1243
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1097 ATGTACGACTCCGACTCAATAATATTGTCGAAAACAAAAACCTGAAACTTGTTTGCCCTC 1156
Query 1244 CTCCTAGCCTCTGCACAGACAATGGAGTAATGGTGGCTTGGACTGGTCTCGAGCATTTTC 1303
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1157 CTCCTAGCCTTTGCACAGACAATGGAGTAATGGTGGCTTGGACTGGTCTCGAGCATTTCC 1216
Query 1304 GTGTAGGAAGATATGATCCACCTCCACCTGCAACTGAACCTGAGGATTATGTGTATGATC 1363
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1217 GTGTAGGAAGATACGATCCACCTCCACCTGCAACTGAACCTGATGATTTTGTGTATGATC 1276
Query 1364 TTCGACCGAGGTGGCCTCTTGGCGAGGAGTATGCGAAAGGAAGAAGCGAAGCTCGTTCTA 1423
||||||| |||||||||||||| ||||||||| | |||||||||||| ||||||||||||
Sbjct 1277 TTCGACCAAGGTGGCCTCTTGGAGAGGAGTATACAAAAGGAAGAAGCAAAGCTCGTTCTA 1336
Query 1424 TGAGAACTGCACGGATCCATCCGTCACTTACTTCAATCATTAGAGCAGATTCTCTTCAAC 1483
|||||||||| ||||| || ||||||||||||||||| || | ||||||||||||||||
Sbjct 1337 TGAGAACTGCGCGGATTCACCCGTCACTTACTTCAATTATCCGTGCAGATTCTCTTCAAC 1396
Query 1484 AACAAACA 1491
||||||||
Sbjct 1397 AACAAACA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76751843675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5