BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45570.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346366 jgi|Araly1|346366|fgenesh1_pg.C_scaffold_4002708 2172 0.0
> Ahg346366 jgi|Araly1|346366|fgenesh1_pg.C_scaffold_4002708
Length=1539
Score = 2172 bits (1176), Expect = 0.0
Identities = 1427/1548 (92%), Gaps = 18/1548 (1%)
Strand=Plus/Plus
Query 37 ATGGATATCATCTTTGAACAAGC-T-T-TGTTCCCT-CTATTTTGCTTTGTCTTATCATT 92
||||| ||||||||||||||||| | | |||| ||| || ||||||||| ||||||||||
Sbjct 1 ATGGACATCATCTTTGAACAAGCTTATCTGTT-CCTCCTCTTTTGCTTTATCTTATCATT 59
Query 93 TTTCATAATCTTCTTCACTACAACAAGACCCCGGAGCTCTCGCAAGGTCGTTCCATCTCC 152
|||| | | ||||||| | ||||||| ||||||||||||||||||||| |||||| ||
Sbjct 60 TTTCCT--T-ATCTTCACCATAACAAGATCCCGGAGCTCTCGCAAGGTCGCTCCATCGCC 116
Query 153 GCCGGGACCTCCGCGACTGCCCATCATCGGAAACATTCACCTTGTCGGTAGAAACCCACA 212
|| ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 117 TCCAGGACCTCCGCGGCTACCCATCATCGGAAACATTCACCTTGTCGGTAAAAACCCACA 176
Query 213 CCATTCATTCGCTGACCTCTCAAAAACATATGGACCAATCATGAGCCTTAAATTTGGAAG 272
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CCATTCATTCGCCGACCTCTCAAAAACATATGGACCAATCATGAGCCTTAAATTTGGAAG 236
Query 273 TTTAAACACAGTGGTCGTAACTTCACCTGAGGCTGCAAGAGAGGTTCTAAGAACATACGA 332
|||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 237 TTTAAACACAGTGGTCGTAAGTTCACCAGAAGCTGCAAGAGAGGTTCTAAGAACATACGA 296
Query 333 CCAAATCCTCTCTAGCCGTACCCCCACTAACTCGATACGGTCCATTAATCACGACAAGGT 392
|||||||||||||| ||||| | |||||||||||||||||| |||||||||| || ||||
Sbjct 297 CCAAATCCTCTCTAACCGTAGCTCCACTAACTCGATACGGTTCATTAATCACCACGAGGT 356
Query 393 TTCCGTTGTCTGGCTTCCACCATCGTCGTCTCGTTGGAGACTTTTGAGAAAACT-GTCGG 451
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| | | |
Sbjct 357 TTCCGTTGTCTGGCTTCCACCATCGTCGCCTCGTTGGAGACTACTGAGAAAACTAG-CTG 415
Query 452 CGACTCAGCTCTTCTCGCCTCAGCGTATCGAAGCCACGAAAACGTTGAGGGAGAACAAGG 511
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 416 CGACTCAGCTCTTCTCGCCTCAGCGTCTCGAAGCCACGAAAACGTTGAGGGAGAACAAGG 475
Query 512 TGAAGGAACTCGTGAGCTTCATGAGTGAAAGCAGCGAGAGAGAAGAAGCTGTTGATATAT 571
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 476 TGAAGGAACTCGTGAGCTTCATAAGTGAAAGCAGCGAAAGAGAAGAAGCTGTTGATATTT 535
Query 572 CTCGTGCTACCTTCATCACTGCTCTTAATATCATATCAAACATTCTGTTTTCTGTCGATC 631
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 CTCGTGCAACCTTCATCACAGCTCTTAATATCATATCAAACATTCTGTTTTCTGTAGATC 595
Query 632 TCGGTAACTACGACTCGAATAAATCCGGTGTGTTTCAAGACACGGTGATTGGTGTCATGG 691
|||||| |||||||||||| |||||| | | |||||| ||||||||||||||||||||||
Sbjct 596 TCGGTAGCTACGACTCGAAAAAATCCAGAGGGTTTCAGGACACGGTGATTGGTGTCATGG 655
Query 692 AAGCTGTCGGGAATCCAGACGCTGCTAACTTCTTTCCATTTCTGGGGTTCCTTGATCTGC 751
||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 656 AAGCTGTAGGGAAGCCAGACGCTGCTAACTTCTTCCCATTTCTGGGGTTTCTTGATCTGC 715
Query 752 AAGGTAATAGAAAGACTCTGAAGGCTTGTTCCGAGAGATTGTTTAAGGTTTTCCGTGGGT 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAGGTAATAGAAAGACTCTGAAGGCTTGTTCCGAGAGATTGTTTAAGGTTTTCCGTGGGT 775
Query 812 TCATTGATGCTAAATTAGCGGAAAAATCATTGCGGGATACTAACTCTAAAGATGTC-CGG 870
|||||||||||||| ||||||||||||| |||||| ||| |||| ||||||||||| |||
Sbjct 776 TCATTGATGCTAAAATAGCGGAAAAATCGTTGCGGAATATTAACCCTAAAGATGTCTCGG 835
Query 871 GAGAGAGATTTTGTGGATGTGCTTCTCGATCTTACCGAAGGAGATGAAGCAGAGCTCAAC 930
||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||
Sbjct 836 -AGAGAGATTTTGTGGATGTGCTTCTCGATCTCACTGAAGGAGAAGAACCAGAGCTCAAC 894
Query 931 ACTAACGATATTGTACACCTTCTCTTGGACCTGTTTGGAGCGGGCACAGACACAAACTCT 990
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 895 ACTAACGATATTGAACACCTTCTCTTGGACCTATTTGGAGCGGGGACAGACACAAACTCT 954
Query 991 AGTACCGTGGAATGGGCAATGGCAGAGTTACTTCGAAACCCTGAAACAATGGTGAAAGCT 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 955 AGTACCGTGGAATGGGCAATGGCAGAGTTACTTCGAAACCCTGAAACAATGGCGAAGGCT 1014
Query 1051 CAGGCTGAGATCGACTGTGTGATTGGTCAGAAAGGTGTTGTTGAAGAGTCTGATATCTCG 1110
||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1015 CAGGCTGAGATCGACAATGTGATTGGTCAAAAAGGTGTTGTTAAAGAGTCTGATATCTCG 1074
Query 1111 GCACTTCCCTATCTACAAGCAGTGGTGAAGGAAACTTTCCGGTTACATCCGGCTGCTCCG 1170
| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1075 GAACTGCCCTATTTACAAGCAGTTGTGAAGGAAACTTTCCGGTTACATCCGGCTGCTCCT 1134
Query 1171 CTACTAGTCCCCCGAAAAGCTGAAT-CAGATGTGGAGGTTCTTGGGTTCATGGTGCCTAA 1229
|| || ||||| |||||||| |||| | ||||||||||||||||| ||| | || |||||
Sbjct 1135 CTTCTTGTCCCACGAAAAGCGGAATTC-GATGTGGAGGTTCTTGGATTCCTCGTACCTAA 1193
Query 1230 AGACACTCAGGTATTTG-TGAACGTGTGGGCCATAGGAAGAGACCCGAACGTGTGGGAGA 1288
|||| ||||||| |||| |||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 1194 AGACGCTCAGGT-TTTGGTGAACGTGTGGGCCATAGGACGAGACCCGAGCGTATGGGAGA 1252
Query 1289 ATTCGTCCCGGTTTAAGCCAGAGAGGTTTTTAGGGAAAGATATCGACCTGAGAGGTAGAG 1348
|| ||||||||||| |||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct 1253 ATCCGTCCCGGTTTGAGCCAGAGAGGTTTATGGGGAAAGAAATCGACGTGAGAGGTAGAG 1312
Query 1349 ATTATGAGCTTACACCATTCGGAGCCGGACGTAGAATATGCCCGGGATTGCCTTTGGCTG 1408
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1313 ATTATGAGCTTACACCATTCGGAGCCGGACGTAGAATTTGCCCGGGATTGCCTTTGGCTG 1372
Query 1409 TGAAAACAGTGCCTCTTATGCTTGCTTCTCTTCTTTATTCATTTGACTGGAAGCTTCCAA 1468
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1373 TGAAAACAGTGCCTCTAATGCTTGCTTCTCTTCTTTATTCCTTTGATTGGAAGCTTCCAA 1432
Query 1469 ACGGTGTCGGTTCAGAGGATTTGGACATGGACGAGA-CTTTCGGTCTCACATTGCACAAG 1527
| || ||| ||| ||||||||||| |||||||||| ||| ||||||||||||||| ||
Sbjct 1433 ATGGCGTCATTTCTGAGGATTTGGATATGGACGAGAGCTT-CGGTCTCACATTGCATAAA 1491
Query 1528 ACCAACCCGTTACATGCCGTACCCGTCAAGAAACGTGGCCGTAATTAG 1575
|||||||||||||||||||| ||||||||||||||| | | |||||||
Sbjct 1492 ACCAACCCGTTACATGCCGTTCCCGTCAAGAAACGTTGTCTTAATTAG 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5