BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45580.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value Ahg322211 jgi|Araly1|322211|fgenesh1_pm.C_scaffold_4002268 2368 0.0 > Ahg322211 jgi|Araly1|322211|fgenesh1_pm.C_scaffold_4002268 Length=1542 Score = 2368 bits (1282), Expect = 0.0 Identities = 1456/1542 (94%), Gaps = 4/1542 (0%) Strand=Plus/Plus Query 62 ATGGACCTCTCACTAATTCAAGGCATGTCTCTGCCTCTCTATTTTCTCTTAACATTATTC 121 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct 1 ATGGACCTCTCACTAATTCAAGGCATGTCTCTGCCCCTCTATTTTCTCATAACATTCTTC 60 Query 122 TTTTTCTTCTTTGCTACCGCAAAAACGCGGAGAAGCTCTAGCACCGGCACGCTTCCACCG 181 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTTTTCTTCTTTGCCACCGCAAAAACGCGGAGAAGCTCTAGCACCGGCACGCTTCCACCG 120 Query 182 GGTCCTCCGATACTGCCATTGGTCGGAAACATATTCCAACTCGGATTCAATCCTCACCGT 241 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 GGTCCTCCGACACTGCCATTGGTTGGAAACATATTCCAACTCGGATTCAATCCTCACCGT 180 Query 242 TCACTTGCTGCCTTTTCGAAAACGTACGGACCTATAATGAGTTTGAAGCTTGGAAGGTTA 301 || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 181 TCGCTTGCTGCCTTTTCGAAAACATACGGACCTCTAATGAGTTTGAAGCTTGGAAGGTTA 240 Query 302 ACCGCAGTGGTTATATCTTCACCAGAAGCAGCTAAAGAGGCACTTAGAACACACGACCAT 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACCGCAGTGGTTATATCTTCACCAGAAGCAGCTAAAGAGGCACTTAGAACACACGACCAT 300 Query 362 GTCATGTCCGCTCGAACCTTTAACGACGCTCTTCGAGCCTTTGATCACCATAAACATTCT 421 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 301 GTCATGTCCGCTCGAACCTTTAACGACCCTATTCGAGCCTTTGATCACCATAAACATTCC 360 Query 422 ATTGTCTGGATTCCCCCCTCTGCTCGTTGGAGGTTTCTGAAGAAAACAATAACAAAATAT 481 |||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct 361 ATTGTCTGGATTCCTCCCTCGGCTCGTTGGAGGTTTCTGAAGAAAACACTAACGAAATAT 420 Query 482 TTGTTATCACCGCAAAACTTAGATGCTATTCAATCTTTAAGAATGAGAAAGGTGGAGGAA 541 |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 421 TTGTTATCACCGAAAAACCAAGATGCTATTCAATCTTTAAGGATGAGAAAGGTGGAGGAA 480 Query 542 CTAGTGAGTTTAGTAAATGAATTTCGCGAGAGAGGAGAAGCTATTGACCTGGCTCGTGCT 601 |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTAGTGGGCTTAGTAAACCAATTTCGCGAGAGAGGAGAAGCTATTGACCTGGCTCGTGCT 540 Query 602 TCCTTCGTCACATCTTTCAATATCATCTCAAATGCTCTGTTTTCAGTAGATTTAGCGACG 661 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 541 TCCTTCGTCACATCTTTCAATATCATCTCAAATGCTCTGTTTTCAGTAGATTTAGCGGCG 600 Query 662 TATGACTCTAACTCCTCGTCTTACGAATTTCACAACACAGTGGTTCACCTGACGGATATC 721 |||||||||||||||||||||||||||||||||||||| || |||| ||||| ||| ||| Sbjct 601 TATGACTCTAACTCCTCGTCTTACGAATTTCACAACACGGTTGTTCGCCTGATGGAGATC 660 Query 722 GCCGGTATACCCAACGTAGGAGACTATTTCCAGTATATGAGGTTTCTTGATTTGCAAGGT 781 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 661 TCCGGTAAACCCAACGTAGGAGACTATTTCCGGTATATGAGGTTTCTTGATTTGCAAGGT 720 Query 782 ACCCGGAAAA-AAGCGGTGCTCTGCATAGAGAAATTGTTTAGGGTTTTTCAAGAATTCAT 840 | ||| |||| ||||||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 721 ATCCG-AAAAGAAGCGGTGCTCTGCATAGAGAGATTGTTTAGGGTTATCCAAGAATTCAT 779 Query 841 TGATGCTCGATTAGCCAAAAGATTTTCTCGGACAGAGAAAGAGCCTAAAGAGGCTTCAAG 900 ||||||||| |||||||||||||| |||| || ||||| ||||||||||||||||||||| Sbjct 780 TGATGCTCGGTTAGCCAAAAGATTGTCTCAGAAAGAGACAGAGCCTAAAGAGGCTTCAAG 839 Query 901 CATCGATATGCTAGACTCCCTTCTGGATCTCACACAGCAAAACGAAGCAGAATTAACAAT 960 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 840 CATGGACATGCTAGACTCCCTTCTGGATCTCACACAGCAAAACGAAGCAGAATTAACCAT 899 Query 961 GAATGATC-TCAAACACTTGCTTCTCGATGTGTTTGTTGCGGGCACAGACACAAACTCTA 1019 |||||| | ||||||||||||||||||||||||||||||| || ||||| |||||||| | Sbjct 900 GAATGA-CATCAAACACTTGCTTCTCGATGTGTTTGTTGCTGGTACAGATACAAACTCAA 958 Query 1020 GTACAATGGAATGGGCAATGACGGAGTTATTCCGTAGCACGGAGAAGATGGTCAAAGCAC 1079 |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| | Sbjct 959 GTACAATGGAGTGGGCAATGACGGAGTTATTCCGTAGCCCGGAGAAGATGGTTAAAGCTC 1018 Query 1080 AGAGTGAGATACGGCAAGTGATTGGTCAAAACGGTTTCGTTCAAGAATCTGATATCCCGA 1139 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1019 AGAGTGAGATACGGCAAGTGATTGGTGAAAACGGTGTCGTTCAAGAATCTGATATCCCGA 1078 Query 1140 GTCTGCCTTACTTACAAGCAATTGTGAAAGAGACTCTTCGTTTGCATCCTGCAGCTCCTT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GTCTGCCTTACTTACAAGCAATTGTGAAAGAGACTCTTCGTTTGCATCCTGCAGCTCCTT 1138 Query 1200 TGATCCCTAGAAAATCAGAATCCGATGTTCAGATTATGGGTTTCCTTGTTCCTAAAAACA 1259 |||||||||||||||| |||||||||||||||||| |||||||||| |||||| | |||| Sbjct 1139 TGATCCCTAGAAAATCGGAATCCGATGTTCAGATTTTGGGTTTCCTCGTTCCTGAGAACA 1198 Query 1260 CCCAGGTTGTTGTGAACGTATGGGCGATAGGACGAGACGCGAGCGTGTGGGAAAATCCAA 1319 |||||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||||| Sbjct 1199 CCCAGGTTCTAGTGAACGTCTGGGCCATAGGACGAGACTCGAGCGTGTGGGATAATCCAA 1258 Query 1320 TGAAGTTCGAGCCAGAGAGGTTCTTGTTACGAGAAACCGATGTAAAAGGCAGAGATTTCG 1379 ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| | Sbjct 1259 TGAAGTTCGAGCCAGAGAGATTCTTGTTACGAGAAACCGATCTAAAAGGCAAAGATTTTG 1318 Query 1380 AGTTGATACCGTTTGGATCAGGAAGAAGGATGTGTCCGGGAATCTCGATGGCTCTTAAGA 1439 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 AGTTGATACCATTTGGGTCAGGAAGAAGGATGTGTCCGGGAATCTCGATGGCTCTTAAGA 1378 Query 1440 CAATGCATATGGTGCTTGCCTCTCTTCTCTATTCCTTTGACTGGAAGCTTCAAAACGGTG 1499 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | Sbjct 1379 CAATGCATATGGTGCTTGCCTCTCTTCTTTATTCCTTTGACTGGAAGCTTCCAAACGGCG 1438 Query 1500 TCGTCCCCGGAAACATTGACATGAGCGAGACTTTCGGTCTTACCTTACACAAGGCCAAAT 1559 ||||||| | |||||| |||||||||||| |||||||||||||||| |||||||||||| Sbjct 1439 TCGTCCCTGAAAACATAGACATGAGCGAGGCTTTCGGTCTTACCTTGCACAAGGCCAAAC 1498 Query 1560 CTCTTTGTGCCGTACCCGTCAAGAAACCTACAATATCGTCTT 1601 ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1499 CTCTTTGTGCCGTACCCGTCAAGAATCCTACAATATCGTCTT 1540 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62696543270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5