BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45620.1
Length=2528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483698 jgi|Araly1|483698|fgenesh2_kg.4__2758__AT2G45620.1 3600 0.0
> Ahg483698 jgi|Araly1|483698|fgenesh2_kg.4__2758__AT2G45620.1
Length=2472
Score = 3600 bits (1949), Expect = 0.0
Identities = 2346/2524 (93%), Gaps = 81/2524 (3%)
Strand=Plus/Plus
Query 1 AACATTGTAAGATCTTCGACTTGGCAAAATTGTTTCACTTTCGCTCTAAAAACTTCATCT 60
||||||| |||||||||||||| || ||| ||||||||||||||||| || ||||| |||
Sbjct 1 AACATTGAAAGATCTTCGACTT-GCCAAAGTGTTTCACTTTCGCTCT-AATACTTCTTCT 58
Query 61 TCACTTTCTCTCCTCCTCCATGGCGGACGGTGGGGCTGAACCTCCAGCTCCACCATCATC 120
||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 59 TCACTTTCTCTTCTCCTCCATGGCGGACGGTGGGGCTGACCCTCCAGCTCCA-C--CATC 115
Query 121 GATAAACGCCGGTGAATTTCTCTTGTCTATT-TTGCACGGAAGTCCTTCGCCGTCGTCAC 179
||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 116 GATAAACGCCGGTGAATTTCTGTTGTCTATTCTT-CACGGAAGTCCTTCGCCGTCGTCAC 174
Query 180 AAGGTCCTCAGCATCATCAGTCATTCGCTCTCGATCCAGCCATCGCAGCCATTGGTCCTA 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 175 AAGGTCCTCAG---CATCAGTCATTCGCTCTCGATCCAGCCATCGCAGCCATTGGCCCTA 231
Query 240 CCGTCAATAATCCTTTTCCTCCGTCGAATTGGCAATCTAACGGTCATCGACCCAGTAATC 299
|||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 232 CCGTGAATAATCCTTTTCCTCCGTCGAATTGGCAATCTAACGGTCATCGATCCGGTAATC 291
Query 300 ATAACCCTCCTTCTTGGCCACTCGCCTTTTCACCTCCTCATAATCTTTCCCCCAATTTCT 359
|||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 292 ATAA---TCCTTCTTGGCCACTGGCCTTTTCACCTCCTCCTAATCTTTCCCCCAATTTCC 348
Query 360 TAGGGTTTCCTCAATTTCCGCCTAGCCC-TTTCACGACGAACCAATTCGACGGTAATCAA 418
|||||||||||||||| |||| || ||| |||| | ||||||||||||||||||||||||
Sbjct 349 TAGGGTTTCCTCAATTCCCGCTTAACCCTTTTC-CTACGAACCAATTCGACGGTAATCAA 407
Query 419 AGAGTATCTCCAGAAGATGCTTATAGATTAGGGTTTCCTGGAACTACAAATCC-TGCTAT 477
||||||||||| |||||||||| |||||||||||||||||| ||| |||| || || ||
Sbjct 408 AGAGTATCTCCGGAAGATGCTTTTAGATTAGGGTTTCCTGGTACTGCAAA-CCACGCAAT 466
Query 478 TCAGTCCATGGTAcagcaacagcagcagcagcagcTACCGCCGCCGCAATCAGAGACTCG 537
||||||||||||||||||||| | || ||||||||||||||||||||||| |||| |||
Sbjct 467 TCAGTCCATGGTACAGCAACA--A-CAACAGCAGCTACCGCCGCCGCAATCTGAGAATCG 523
Query 538 GAAGCTTGTTTTTGGTTCTTTCTCGGGAGATGCTACTCAAAGCCTTAATGGGTTACATAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GAAGCTTGTTTTTGGTTCTTTCTCGGGAGATGCTACTCAAAGCCTTAATGGGTTACATAA 583
Query 598 CGGGAACTTGAAGTATGATTCTAATCAACACGAACAGCTCATGAGGCATCCCCAATCTAC 657
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 584 CGGAAACTTGAAGTATGATTCTAATCAACAGGAACAGCTCATGAGGCATCCCCAATCTAC 643
Query 658 TCTCTCGAATTCTAACATGGATCCAAACTTGTCTCATCATCGGAATCATGATCTCCATGA 717
|||||||||||||||||||||||||||| ||| ||| | | | || |
Sbjct 644 TCTCTCGAATTCTAACATGGATCCAAAC----CTC--CAT--G----A--A---CC-T-- 683
Query 718 ACAGAGGGGAGGTCACAGCGGAAGAGGAAACTGGGGTCATATTGGGAATAACGGCAGGGG 777
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 --AGA--GGAAGTCACAGCGGAAGAGGAAACTGGGGTCATATTGGGAATAACGGCAGGGG 739
Query 778 TTTAAAGTCTActcctcctcctcctcctcctGGATTTTCGAGTAACCAAAGAGGATGGGA 837
||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 740 TTTCAAGTCTA------CTCCTCCTCCTCCTGGATTTTCGAGTAACCAAAGAGGAAGGGA 793
Query 838 TATGAGTTTAGGAAGTAAGGATGACGATAGAGGGAT-GG--G------TAGGAATCATGA 888
||||| |||| |||||||||||| ||||||||||| || | ||||||||||||
Sbjct 794 TATGAATTTAAAAAGTAAGGATGATGATAGAGGGATGGGTAGTTTCCATAGGAATCATGA 853
Query 889 TCAAGCAATGGGCGAGCATTCTAAAG-TTTGGAATCAAAGTGTTGATTTTTCTGCTGAGG 947
|||||||||||| ||||||||| ||| ||||| ||||||||||| |||||||||||||||
Sbjct 854 TCAAGCAATGGGTGAGCATTCT-AAGTTTTGGGATCAAAGTGTTAATTTTTCTGCTGAGG 912
Query 948 CTAATAGATTAAGGGGATTGTCTATCCAGAACGAGAGCAAGTTCAATCTTAGTCAACAAA 1007
|| |||||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 913 CTGATAGATTAAGGGGATTATCAATCCAGAATGATAGCAAGTTCAATCTTAGTCAACAAA 972
Query 1008 TAGATCATCCTGGACCACCTAAGGGTGCAAGTCTACATTCTGTATCAGCAGCTGATGCTG 1067
||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 973 TAGATCATCCTGGACTACCTAAGGGTACAAGTCTTCATTCTGTATCAGCAGCTGATGCTG 1032
Query 1068 CGGATTCCTTTTCGATGTTGAACAAGGAAGCTCGTCGTGGAGGTGAACGTAGAGAGGAAT 1127
|||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||
Sbjct 1033 CGGATTCCTTTTCGATGTTGAAAAAGGAAGCTCGTGGTGGAAGTGAACGTAAAGAGGAAT 1092
Query 1128 TGGGGCAGCTCAGTAAGGCAAAGAGGGAAGGCAATGCAAA--CT----C------TGACG 1175
|||||||||||||||||| ||||||||||||||||||||| || | |||||
Sbjct 1093 TGGGGCAGCTCAGTAAGGGAAAGAGGGAAGGCAATGCAAACTCTGGCACTGTTGATGACG 1152
Query 1176 AGATTGAGGATTTTGGAGAAGATATTGTTAAGTCTTTATTGCTTGAAGATGAAACTGGTG 1235
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1153 AGATTGAGGATTTTGGGGAAGATATTGTTAAGTCTTTATTGCTTGAAGATGAAACTGGCG 1212
Query 1236 AGAAGGATGCCAATGATGGGAAGAAGGATAGCAAGACTTCTCGCGAGAAGGAGTCGAGAG 1295
| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1213 ATAAGGACGCCAAAGATGGGAAGAAGGATAGCAAGACTTCTCGCGAGAAGGAATCGAGAA 1272
Query 1296 TGGACAATCGGGGTCAACGGCTGCTTGGCCAAAAGGCAAGAATGGTTAAAATGTATATGG 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TGGACAATCGGGGTCAACGGCTGCTTGGCCAAAAGGCAAGAATGGTTAAAATGTATATGG 1332
Query 1356 CATGTCGAAATGACATCCACAGGTATGATGCTACATTCATTGCAATCTACAAGTCCCTGA 1415
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1333 CATGTCGAAATGACATCCACAGGTATGATGCTTCATTCATTGCAGTCTACAAGTCCCTGA 1392
Query 1416 TTCCCGCAGAAGAGGAGCTGGAGAAGCAGAGACAACTAATGGCACATCTAGAGAATCTAG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TTCCCGCAGAAGAGGAGCTGGAGAAGCAGAGACAACTAATGGCACATCTAGAGAATCTAG 1452
Query 1476 TTGCCAAAGAATGGCCTCATGCAAAGTTGTATCTTTACGGGTCCTGTGCTAACTCTTTTG 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TTGCCAAAGAATGGCCTCATGCAAAGTTGTATCTTTACGGGTCCTGTGCTAACTCTTTTG 1512
Query 1536 GTTTCCCGAAGAGCGACATCGACGTTTGCCTTGCAATCGAAGGTGATGATATCAACAAAT 1595
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1513 GTTTTCCGAAGAGCGACATCGATGTTTGCCTTGCAATCGAAGGTGATGATATCAACAAAT 1572
Query 1596 CTGAGATGTTGTTAAAGCTGGCAGAGATCTTGGAATCAGATAATCTCCAAAATGTTCAGG 1655
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1573 CTGAGATGTTGTTAAAGTTGGCGGAGATGTTGGAATCAGATAATCTCCAAAATGTTCAGG 1632
Query 1656 CTCTAACACGAGCTAGGGTTCCAATTGTAAAACTTATGGATCCGGTTACTGGGATATCTT 1715
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 CACTAACACGAGCTAGGGTTCCAATTGTAAAACTTATGGATCCGGTTACTGGGATATCTT 1692
Query 1716 GTGATATCTGCATCAACAATGTATTGGCTGTTGTGAACACAAAGCTCTTGCGAGATTATG 1775
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1693 GTGATATCTGCATCAACAATGTATTGGCTGTTGTGAACACAAAGCTTTTGCGAGATTATG 1752
Query 1776 CTCAGATAGATGTTCGTTTAAGGCAGTTGGCTTTCATTGTGAAACATTGGGCAAAGTCAA 1835
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 CGCAGATAGATGTGCGTTTAAGGCAGTTGGCTTTCATTGTGAAACATTGGGCAAAGTCAA 1812
Query 1836 GAAGGGTTAATGAAACTTATCAAGGAACACTTTCCAGCTACGCGTACGTTCTGATGTGTA 1895
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1813 GAAGGGTTAATGAAACATATCAAGGAACACTTTCCAGCTACGCGTACGTTCTGATGTGCA 1872
Query 1896 TCCATTTCTTGCAGCAGCGTAGGCCGCCAATTCTTCCTTGCTTACAGGAAATGGAGCCGA 1955
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1873 TCCATTTCTTGCAGCAGCGTAGGCCACCGATTCTTCCTTGCTTACAGGAAATGGAGCCGA 1932
Query 1956 CTTACTCAGTTCGGGTAGATAATATCCGGTGCACATACTTTGATAATGTTGATAGACTCC 2015
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1933 CTTACTCAGTTCGGGTAGATAATATCCGGTGCGCATACTTTGATAATGTTGATAGACTCC 1992
Query 2016 GTAACTTCGGATCAAACAACAGGGAGACCATAGCTGAGCTGGTCTGGGGATTCTTCAACT 2075
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1993 GTAACTTCGGATCAAGTAACAGGGAGACCATAGCTGAGCTGGTGTGGGGATTCTTCAACT 2052
Query 2076 ACTGGGCTTACGCTCATGACTATGCGTATAATGTTGTATCCGTCCGCACCGGTTCCATAC 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 ACTGGGCTTACGCTCATGACTATGCGTATAATGTTGTATCCGTCCGCACCGGTTCCATAC 2112
Query 2136 TTGGGAAGCGAGAGAAGGACTGGACGAGAAGGGTGGGGAACGATAGGCACTTGATATGCA 2195
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2113 TTGGGAAGCGAGAGAAGGACTGGACGAGAAGGGTGGGGAACGACAGACACTTGATATGCA 2172
Query 2196 TAGAGGATCCGTTTGAGACGAGCCATGATCTGGGTAGGGTGGTCGACAAGTTTAGTATCA 2255
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2173 TAGAGGATCCGTTTGAGACGAGCCATGATCTGGGTCGGGTGGTCGACAAGTTTAGTATCC 2232
Query 2256 GAGTGTTGAGGGAGGAGTTCGAAAGAGCTGCAAGGATTATGCATCAAGATCCTAACCCAT 2315
||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2233 GAGTGTTGAGGGAAGAGTTTGAACGAGCTGCAAGGATTATGCATCAAGAACCTAACCCAT 2292
Query 2316 GTGCCAAGCTTTTGGAACCATATATTCCTGAAGATAATAATGGACAAGGCCACAACTGAA 2375
||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 2293 GTGCCAAGCTTTTCGAACCATATATTCCTGGAGATAATAATGGACAAGGCAACAACTAAA 2352
Query 2376 CTTTTAAAACATTTGAATGGCGGATTCGTGTGGCTTGTATATATTTATG---GG-TAGAA 2431
| || ||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 2353 CCTTGAAAACATTTGAAT--CGGATTCGTGTGGCTTGTATATATTTATGTATGGGTAGAA 2410
Query 2432 GATTCATGCTCTGTTCtttttgcttttttGGTTGTGATTTGAAATCTTGCTTGTGACCCA 2491
| ||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 2411 GGTTCCGGCTCTGTTCTTTTTGCTTTTT-GGTT-TGATTTGGAATCTTGCTTGTGACCCA 2468
Query 2492 ACAA 2495
||||
Sbjct 2469 ACAA 2472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95301792990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5