BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45630.2
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935521 jgi|Araly1|935521|scaffold_403509.1 1489 0.0
Ahg952125 jgi|Araly1|952125|scaffold_38400004.1 512 2e-144
Ahg925997 jgi|Araly1|925997|scaffold_201558.1 479 2e-134
> Ahg935521 jgi|Araly1|935521|scaffold_403509.1
Length=1037
Score = 1489 bits (806), Expect = 0.0
Identities = 917/971 (94%), Gaps = 6/971 (1%)
Strand=Plus/Plus
Query 50 CCACCGAGAAACTGCCACGTGTCCTCATCGTCAAACGTCCCGACGCCATGGCTGTGTTAG 109
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 50 CCACCGAGAATCTTCCACGTGTCCTCATCGTCAAACGTCCCGCCGCCATGGCTGTGTTGG 109
Query 110 GCGACGGATTCGTCGCCTCCACCAAGTTCGAGATCCTCAAAGCCTTCGAGTCTCCGCTTC 169
||||| ||||||| |||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 110 GCGACAGATTCGTGGCCTCCACCAAGTTTGAGATCTTGAAAGCCTTCGAGTCTCCGCTTC 169
Query 170 CTCTTCCTGAATTCTTGGCCTATCACTCTGACTCCATCTCCGCCATTATAGCCCCTGTAG 229
|||| |||| ||||||||| || ||||| ||||| |||||||| |||||||||| ||||
Sbjct 170 CTCTCCCTGCTTTCTTGGCCAATGACTCTCACTCCGTCTCCGCCGTTATAGCCCCGGTAG 229
Query 230 CTGCTCCGGTCACAGCCGATCTGATTCGCATCCTCCCTAATCTTCGCTTGGTTGTTACTA 289
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 230 CTGCTCCCGTCACAGCCGATCTGATTCGCCTCCTCCCGAATCTTCGCTTGGTTGTTACTA 289
Query 290 CCAGCGCCGGCGTTGACCATGTTGACTTAGTTGAGTGTCGTCGTCGAGGCATCTCCGTCG 349
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CCAGCGCCGGCGTTGACCACGTTGACTTAGTTGAGTGTCGTCGTCGAGGCATCTCCGTCG 349
Query 350 CCAACGCTGGCTCAAGCTTCTCGGAAGATGTCGCAGATACTGCCGTCGGTTTACTCATCG 409
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 350 CCAACGCTGGCTCAAGCTTCTCAGAAGATGTCGCAGATACTGCCGTCGGTTTACTCATCG 409
Query 410 ACGTCTTCCGCCGCATCTCCGCCGCCAATCGGTTCGTTAAGCAACGGTTTTGGCCACTCA 469
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ACGTTTTCCGCCGCATCTCTGCCGCCAATCGGTTCGTTAAGCAACGGTTTTGGCCACTCA 469
Query 470 AAGGCGATTATCCTCTCGGTTCCAAGTTGGGGAGAAAGCGAATCGGAATCGTGGGACTAG 529
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AAGGGGATTATCCCCTCGGTTCCAAGTTGGGGAGAAAGCGAATCGGAATCGTGGGACTAG 529
Query 530 GAAGCATTGGCTCGAAAGTAGCGACAAGGCTCGACGCC-TTTGGTTGCCAAATTTCATAT 588
|||||||||||||||| ||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 530 GAAGCATTGGCTCGAAGGTAGCTACGAGGCTCGA-GCCCTTTGGTTGCCAAATTTCATAT 588
Query 589 AGCTCAAGAAAC-AGAAAACCATATGATGTTCCATATCACTATTACATGGATATAGAGGA 647
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 589 AGCTCAAGAAACCA-AAAACCATATGATGTTCCATATCATTATTACATGGATATAGAGGA 647
Query 648 GATGGCAGCTAATAGTGATGCACTCATAATCTGTTGTGAATTGAATGAGAAGAC-ATTGC 706
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 648 GATGGCAGCTAACAGTGATGCACTCATAATCTGTTGTGAATTGAATGAGAAGACTAT-GC 706
Query 707 GTTTGATTAATAAAGATGTTCTTTCTGCTCTGGGAAAGCGAGGAGTGATCGTTAACGTGG 766
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 707 ATTTCATTAATAAAGATGTTCTTTCTGCTCTGGGAAAGCAAGGAGTGATCGTTAACGTCG 766
Query 767 CTCGTGGGGCTATAATCGATGAGGAAGAAATGGTGAGATGTTTGAGAGAAGGTGAGATTG 826
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 767 CTCGTGGGGCTATAATCGATGAGGTAGAAATGGTGAGATGCTTGAGAGAAGGTGAGATTG 826
Query 827 GTGGTGCTGGTTTGGATGTTTTTGAAGATGAGCCTAATGTTCCGAAGGAGCTTTTTGAAT 886
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 827 GTGGTGCTGGTTTGGATGTTTTTGAAGATGAGCCTAATGTTCCAAAGGAGCTTTTTGAAT 886
Query 887 TGGATAATGTTGTTTTCTCTCCACATAGTGCTTTTATGACATTGGAAGGTCTTGAAGAAC 946
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 887 TGGATAATGTTGTTTTCTCTCCACATTGTGCTTTTATGTCACTGGAAGGTCTTGAAGAAC 946
Query 947 TTGGGAAAGTTGTAGTAGGGAATATTGAAGCTTTCTTCTCCAATAAACCTCTTTTAACTC 1006
|||||||| || |||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 947 TTGGGAAACTTTTAGTAGCGAATATTGAAGCTTTCCTCTCCAATAAACCTCTACTAACTC 1006
Query 1007 CTGTTCTTTGA 1017
|||||||||||
Sbjct 1007 CTGTTCTTTGA 1017
> Ahg952125 jgi|Araly1|952125|scaffold_38400004.1
Length=441
Score = 512 bits (277), Expect = 2e-144
Identities = 329/355 (93%), Gaps = 0/355 (0%)
Strand=Plus/Plus
Query 28 GCAACGATGGCGACGAGCTCTTCCACCGAGAAACTGCCACGTGTCCTCATCGTCAAACGT 87
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 49 GCAACGATGACGACGAGCTCTTCCACCGAGAATCTTCCACGTGTCCTCATCGTCAAACGT 108
Query 88 CCCGACGCCATGGCTGTGTTAGGCGACGGATTCGTCGCCTCCACCAAGTTCGAGATCCTC 147
|||| |||||||| |||||| |||||| ||||||| |||||||||||||| |||||| |
Sbjct 109 CCCGCCGCCATGGATGTGTTCGGCGACAGATTCGTGGCCTCCACCAAGTTTGAGATCTTG 168
Query 148 AAAGCCTTCGAGTCTCCGCTTCCTCTTCCTGAATTCTTGGCCTATCACTCTGACTCCATC 207
||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 169 AAAGCCTTCGAGTTTCCGCTTCCTCTCCCTGAATTCTTGGCCAATCACTCTGACTCCGTC 228
Query 208 TCCGCCATTATAGCCCCTGTAGCTGCTCCGGTCACAGCCGATCTGATTCGCATCCTCCCT 267
|||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 229 TCCGCCGTTATAGCCCCTGTAGCTGCTCCCGTCACAGCCGATCTGATTCGCCTCCTCCCG 288
Query 268 AATCTTCGCTTGGTTGTTACTACCAGCGCCGGCGTTGACCATGTTGACTTAGTTGAGTGT 327
|||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||||
Sbjct 289 AATCTTCGCTTGGTTGGTACTACCAGCGCCGGTGTTGACCACGTCGACTTAGTTGAGTGT 348
Query 328 CGTCGTCGAGGCATCTCCGTCGCCAACGCTGGCTCAAGCTTCTCGGAAGATGTCG 382
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 349 CGTCATCGAGGCATCTCCGTCGCCAACGCAGGCTCAAGCTTCTCCGAAGATGTCG 403
> Ahg925997 jgi|Araly1|925997|scaffold_201558.1
Length=440
Score = 479 bits (259), Expect = 2e-134
Identities = 323/355 (91%), Gaps = 0/355 (0%)
Strand=Plus/Plus
Query 28 GCAACGATGGCGACGAGCTCTTCCACCGAGAAACTGCCACGTGTCCTCATCGTCAAACGT 87
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 49 GCAACGATGACGACGAGCTCTTCCACCGAGAATCTTCCACGTGTCCTCATCGTCAAACGT 108
Query 88 CCCGACGCCATGGCTGTGTTAGGCGACGGATTCGTCGCCTCCACCAAGTTCGAGATCCTC 147
|||| ||||||||||||||| |||||| |||| || |||||||||||||| |||||| |
Sbjct 109 CCCGCCGCCATGGCTGTGTTCGGCGACAGATTTGTGGCCTCCACCAAGTTTGAGATCTTG 168
Query 148 AAAGCCTTCGAGTCTCCGCTTCCTCTTCCTGAATTCTTGGCCTATCACTCTGACTCCATC 207
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||
Sbjct 169 AAAGCCTTCGAGTCTCCGCTTCCTCTCCCTGAATTATTGGCCAATCACTCTGACTCCGTC 228
Query 208 TCCGCCATTATAGCCCCTGTAGCTGCTCCGGTCACAGCCGATCTGATTCGCATCCTCCCT 267
|||| | ||||||||| |||||||||||| |||||| |||||||||||||| |||||||
Sbjct 229 TCCGTCGTTATAGCCCATGTAGCTGCTCCCGTCACAACCGATCTGATTCGCCTCCTCCCG 288
Query 268 AATCTTCGCTTGGTTGTTACTACCAGCGCCGGCGTTGACCATGTTGACTTAGTTGAGTGT 327
||||||||||| |||| ||| ||||||||||| |||||||| || |||||||| ||||||
Sbjct 289 AATCTTCGCTTCGTTGGTACAACCAGCGCCGGTGTTGACCACGTCGACTTAGTGGAGTGT 348
Query 328 CGTCGTCGAGGCATCTCCGTCGCCAACGCTGGCTCAAGCTTCTCGGAAGATGTCG 382
|||| ||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 349 CGTCATCGTGGCATCTCCGTCGCCAACGCAGGCTCAAGCTTCTCGGAAGATGTCG 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5