BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45660.1

Length=1320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935524 jgi|Araly1|935524|scaffold_403512.1                       1157    0.0  


> Ahg935524 jgi|Araly1|935524|scaffold_403512.1
Length=688

 Score = 1157 bits (626),  Expect = 0.0
 Identities = 671/691 (97%), Gaps = 9/691 (1%)
 Strand=Plus/Plus

Query  393   GAAATT-AACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGA  451
             |||||| ||| ||| ||||||  |||||||||||||||||||||||||||||||||||||
Sbjct  1     GAAATTAAAC-AAACAAGAAG--ATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGA  57

Query  452   ATGCAACAAGCAGACAAGTGACTTTCTCCAAAAGAAGGAATGGTTTGTTGAAGAAAGCCT  511
             |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct  58    ATGCAACAAGCAGACAAGTGACTTTCTCTAAACGAAGGAATGGTTTGTTGAAGAAAGCCT  117

Query  512   TTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTTCTCTTATCATCTTCTCTCCTAAAGGCA  571
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  118   TTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTTCTCTTATCATCTTCTCTCCCAAAGGCA  177

Query  572   AACTTTATGAATTCGCCAGCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATA  631
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178   AACTTTATGAATTCGCCAGCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATA  237

Query  632   CTAAGGATCGAGTCAGCACCAAACCGGTTTCTGAAGAAAATATGCAGCATTTGAAATATG  691
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238   CTAAGGATCGAGTAAGCACCAAACCGGTTTCTGAAGAAAATATGCAGCATTTGAAATATG  297

Query  692   AAGCAGCAAACATGATGAAGAAAATTGAACAACTCGAAGCTTCTAAACGTAAACTCTTGG  751
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298   AAGCAGCAAACATGATGAAGAAAATTGAACAACTCGAAGCTTCTAAACGTAAACTCTTGG  357

Query  752   GAGAAGGCATAGGAACATGCTCAATCGAGGAGCTGCAACAGATTGAGCAACAGCTTGAGA  811
             | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  358   GGGAAGGCATAGGAACATGCTCAATCGAGGAGCTGCAACATATTGAGCAACAGCTTGAGA  417

Query  812   AAAGTGTCAAATGTATTCGAGCAAGAAAGACTCAAGTGTTTAAGGAACAAATTGAGCAGC  871
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  418   AAAGTGTCAAATGTATCCGAGCAAGAAAGACTCAAGTGTTTAAGGAACAAATTGAGCAGC  477

Query  872   TCAAGCAAAAGGAGAAAGCTCTAGCTGCAGAAAACGAGAAGCTCTCTGAAAAGTGGGGAT  931
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478   TCAAGCAAAAGGAGAAAGCTCTAGCTGCAGAAAACGAGAAGCTCTCTGAAAAGTGGGGAT  537

Query  932   CTCATGAAAGCGA-AGTTTGGTCAAATAAGAATCAAGAAAGTACTGGAAGAGGTGATGAA  990
             ||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  538   CTCATGAAATCGTGA-TTTGGTCAAATAAGAATCAAGAAAGTACTGGAAGAGGTGATGAA  596

Query  991   GAGAGTAGCCCAAGTTCTGAAGTAGAGACGCAATTGTTCATTGGGTTACCTTGTTCTTCA  1050
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  597   GAGAGTAGCCCAAGTTCTGAAGTAGAGACGCAATTGTTCATTGGGCTACCTTGTTCTTCA  656

Query  1051  AGAAAGTGATCTCCACTCAACaaa-aaaaac  1080
             |||||||||| || |||||||||| ||||||
Sbjct  657   AGAAAGTGAT-TC-ACTCAACAAATAAAAAC  685



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49369177515


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5