BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45660.1 Length=1320 Score E Sequences producing significant alignments: (Bits) Value Ahg935524 jgi|Araly1|935524|scaffold_403512.1 1157 0.0 > Ahg935524 jgi|Araly1|935524|scaffold_403512.1 Length=688 Score = 1157 bits (626), Expect = 0.0 Identities = 671/691 (97%), Gaps = 9/691 (1%) Strand=Plus/Plus Query 393 GAAATT-AACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGA 451 |||||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAATTAAAC-AAACAAGAAG--ATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGA 57 Query 452 ATGCAACAAGCAGACAAGTGACTTTCTCCAAAAGAAGGAATGGTTTGTTGAAGAAAGCCT 511 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 58 ATGCAACAAGCAGACAAGTGACTTTCTCTAAACGAAGGAATGGTTTGTTGAAGAAAGCCT 117 Query 512 TTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTTCTCTTATCATCTTCTCTCCTAAAGGCA 571 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 118 TTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTTCTCTTATCATCTTCTCTCCCAAAGGCA 177 Query 572 AACTTTATGAATTCGCCAGCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATA 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AACTTTATGAATTCGCCAGCTCCAATATGCAAGATACCATAGATCGTTATCTGAGGCATA 237 Query 632 CTAAGGATCGAGTCAGCACCAAACCGGTTTCTGAAGAAAATATGCAGCATTTGAAATATG 691 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CTAAGGATCGAGTAAGCACCAAACCGGTTTCTGAAGAAAATATGCAGCATTTGAAATATG 297 Query 692 AAGCAGCAAACATGATGAAGAAAATTGAACAACTCGAAGCTTCTAAACGTAAACTCTTGG 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AAGCAGCAAACATGATGAAGAAAATTGAACAACTCGAAGCTTCTAAACGTAAACTCTTGG 357 Query 752 GAGAAGGCATAGGAACATGCTCAATCGAGGAGCTGCAACAGATTGAGCAACAGCTTGAGA 811 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 358 GGGAAGGCATAGGAACATGCTCAATCGAGGAGCTGCAACATATTGAGCAACAGCTTGAGA 417 Query 812 AAAGTGTCAAATGTATTCGAGCAAGAAAGACTCAAGTGTTTAAGGAACAAATTGAGCAGC 871 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 AAAGTGTCAAATGTATCCGAGCAAGAAAGACTCAAGTGTTTAAGGAACAAATTGAGCAGC 477 Query 872 TCAAGCAAAAGGAGAAAGCTCTAGCTGCAGAAAACGAGAAGCTCTCTGAAAAGTGGGGAT 931 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TCAAGCAAAAGGAGAAAGCTCTAGCTGCAGAAAACGAGAAGCTCTCTGAAAAGTGGGGAT 537 Query 932 CTCATGAAAGCGA-AGTTTGGTCAAATAAGAATCAAGAAAGTACTGGAAGAGGTGATGAA 990 ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 CTCATGAAATCGTGA-TTTGGTCAAATAAGAATCAAGAAAGTACTGGAAGAGGTGATGAA 596 Query 991 GAGAGTAGCCCAAGTTCTGAAGTAGAGACGCAATTGTTCATTGGGTTACCTTGTTCTTCA 1050 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 597 GAGAGTAGCCCAAGTTCTGAAGTAGAGACGCAATTGTTCATTGGGCTACCTTGTTCTTCA 656 Query 1051 AGAAAGTGATCTCCACTCAACaaa-aaaaac 1080 |||||||||| || |||||||||| |||||| Sbjct 657 AGAAAGTGAT-TC-ACTCAACAAATAAAAAC 685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49369177515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5