BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45670.1
Length=2062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483703 jgi|Araly1|483703|fgenesh2_kg.4__2763__AT2G45670.1 3029 0.0
> Ahg483703 jgi|Araly1|483703|fgenesh2_kg.4__2763__AT2G45670.1
Length=2039
Score = 3029 bits (1640), Expect = 0.0
Identities = 1946/2081 (94%), Gaps = 71/2081 (3%)
Strand=Plus/Plus
Query 1 AAGCGTGTACCAAtctctcccgctctgtctctctctctctctttcctccatctctctgtg 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AAGCGTGTACCAATCTCTCCCGCTCTG------TCTCTCTCTTTCCTCCATCTCTCTGTG 54
Query 61 ttcttctTACAGACACC--GAGAATGGCGGATCCTGATCTGTCTTCTCCTTTGATCCACC 118
||||||||||||||||| ||||||||||||||||||| |||| | ||| ||||||||||
Sbjct 55 TTCTTCTTACAGACACCGAGAGAATGGCGGATCCTGATTTGTCGTGTCCGTTGATCCACC 114
Query 119 ATCAATCCTCCGATCAACCTGAAGTTGTTATCTCTATCGCcgacgacgacgacgacgaGT 178
|||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 115 ATCAATCCTCCGATCAACCTGAAGTTGTTATCTC-A------A--TCGACGACGACGAGT 165
Query 179 CAGGACTCAATCTTCTTCCAGCCGTTGTTGACCCTCGTGTTTCACGAGGTTTTGAGTTTG 238
|||||||||| |||| | || | ||| | | |||||||||||||
Sbjct 166 CAGGACTCAA---TCTT-C--CC------G---CTC--G--T-----GGTTTTGAGTTTG 201
Query 239 ACCATCTTAATCCTTATGGCTTTCTCAGCGAGTCAGAGCCTCCGGTTCTCGGTCCGACGA 298
|||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 202 ACCATCGTAATCCTTATGGGTTTCTCAGCGAGTCCGAGCCTCCGGTTCTCGGTCCGACGA 261
Query 299 CGGTGGATCCATTCCGGAACAATACACCTGGAGTTAGCGGATTGTACGAAGCGATTAAGC 358
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 262 CGGTGGATCCATTCCGGAACAATACACCTGGAGTTAGCGGATTGTACGAGGCGATTAAGA 321
Query 359 TCGTGATTTGTCTTCCGATTGCTCTGATTAGACTTGTTCTCTTTGCTGCTAGCTTAGCTG 418
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 322 TCGTGATTTGTCTTCCGATTGCTCTGATTAGACTTGTTCTGTTTGGTGCTAGCTTAGCTG 381
Query 419 TTGGTTACTTGGCTACAAAATTGGCACTTGCTGGCTGGAAAGATAAAGAGAACCCTATGC 478
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 382 TTGGTTACTTGGCTACAAAATTAGCTCTTGCTGGCTGGAAAGATAAAGAGAACCCTATGC 441
Query 479 CTCTTTGGAGATGCAGAATCATGTGGATTACTCGGATCTGTACCAGATGTATCCTCTTCT 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 442 CTCTTTGGAGATGCAGAATCATGTGGATTACTCGGATCTGTACCAGATTTATCCTCTTCT 501
Query 539 CTTTTGGCTATCAGTGGATAAGAAGGAAAGGGAAACCTGCTCGGAGAGAGATTGCTCCGA 598
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 502 CTTTTGGCTATCAGTGGATAAGACGGAAAGGGAAACCTGCTCGCAGAGAGATTGCTCCCA 561
Query 599 TTGTTGTATCAAATCATGTTTCTTATATTGAACCAATCTTCTACTTCTATGAATTATCAC 658
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TCGTTGTATCGAACCATGTTTCTTATATTGAACCAATCTTCTACTTCTATGAATTATCAC 621
Query 659 CGACCATTGTTGCATCGGAGTCACATGATTCACTTCCATTTGTTGGAACTATTATCAGGG 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CGACCATTGTTGCATCTGAGTCACATGATTCACTTCCATTTGTTGGAACTATTATCAGGG 681
Query 719 CAATGCAGGTGATATATGTGAATAGATTCTCACAGACATCAAGGAAGAATGCTGTGCATG 778
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 682 CAATGCAGGTGATATATGTGAATAGATTCTCACAGACATCAAGGAAGAACGCTGTGCATG 741
Query 779 AAATAAAGAGAAAAGCTTCCTGCGATAGATTTCCTCGTCTGCTGTTATTCCCCGAAGGAA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 742 AAATAAAGAGAAAAGCTTCCTGCGATAGATTTCCTCGTCTGCTGTTATTCCCCGAAGGTA 801
Query 839 CCACGACTAATGGGAAAGTTCTTATTTCCTTCCAACTCGGTGCTTTCATCCCTGGTTACC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CCACGACTAATGGGAAAGTTCTTATTTCCTTCCAACTCGGTGCTTTCATCCCTGGTTACC 861
Query 899 CTATTCAACCTGTAGTAGTCCGGTATCCCCATGTACATTTTGATCAATCCTGGGGAAATA 958
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 862 CTATTCAACCTGTAGTGGTCCGGTATCCCCATGTACATTTTGATCAATCCTGGGGAAACA 921
Query 959 TCTCTTTGTTGACGCTCATGTTTAGAATGTTCACTCAGTTTCACAATTTCATGGAGGTTG 1018
||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 922 TCTCTCTGTTGATGCTCATGTTTAGAATGTTCACCCAGTTTCACAATTTCATGGAGGTTG 981
Query 1019 AATATCTTCCTGTAATCTATCCCAGTGAAAAGCAAAAGCAGAATGCTGTGCGTCTCTCAC 1078
|||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 982 AATACCTTCCAGTAATATACCCCAGTGAAAAGCAAAAACAGAATGCTGTGCGTCTCTCAC 1041
Query 1079 AGAAGACTAGTCATGCAATTGCAACATCTTTGAATGTCGTCCAAACATCCCATTCTTTTG 1138
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1042 AGAAGACCAGTCATGCAATTGCAACATCTTTGAATGTCGTCCAAACATCCCATTCTTATG 1101
Query 1139 CGGACTTGATGCTACTCAACAAAGCAACTGAGTTAAAGCTGGAGAACCCCTCAAATTACA 1198
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CGGACTTGATGCTACTCAACAGAGCAACTGAGTTAAAGCTGGAGAACCCCTCAAATTACA 1161
Query 1199 TGGTTGAAATGGCAAGAGTTGAGTCGCTATTCCATGTAAGCAGCTTAGAGGCAACGCGAT 1258
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1162 TGGTTGAAATGGCAAGAGTTGAGTCACTCTTCCATGTAAGCAGCTTAGAGGCAACGCGAT 1221
Query 1259 TTTTGGATACATTTGTTTCCATGATTCCGGACTCGAGTGGACGTGTTAGGCTACATGACT 1318
||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1222 TTTTGGATATATTTGTTTCCATGATTCCCGACTCGAGTGGACGTGTTAGGTTACATGACT 1281
Query 1319 TTCTTCGGGGTCTTAAACTGAAACCTTGCCCTCTTTCTAAAAGGATATTTGAGTTCATCG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TTCTTCGGGGTCTTAAACTGAAACCTTGCCCTCTTTCTAAAAGGATATTTGAGTTCATCG 1341
Query 1379 ATGTGGAGAAGGTCGGATCAATCACTTTCAAACAGTTCTTGTTTGCCTCGGGCCACGTGT 1438
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1342 ATGTGGAGAAAGTCGGATCAATCACTTTCAAACAGTTCTTGTTTGCCTCGGGCCATGTAT 1401
Query 1439 TGACACAGCCGCTTTTTAAGCAAACATGCGAGCTAGCCTTTTCCCATTGCGATGCAGATG 1498
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TGACACAGCCGCTTTTTAAGAAAACATGCGAGCTAGCCTTTTCCCATTGCGATGCAGATG 1461
Query 1499 GAGATGGCTATATTACAATTCAAGAACTCGGAGAAGCTCTCAAAAACACAATCCCAAACT 1558
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 1462 GAGATGGCTATATTACAATTCAAGAACTTGGAGACGCTCTCAAAAACACAATCCCAAGCT 1521
Query 1559 TGAACAAGGACGAGATTCGAGGAATGTACCATTTGCTAGACGACGACCAAGATCAAAGAA 1618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TGAACAAGGACGAGATTCAAGGAATGTACCATTTGCTAGACGACGACCAAGATCAAAGAA 1581
Query 1619 TCAGCCAAAATGACTTGTTGTCCTGCTTAAGAAGAAACCCTCTTCTCATAGCCATCTTTG 1678
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1582 TCAGCCAAAATGACTTGTTGTCCTGCTTAAGAAGAAACCCTCTTCTCATAGCGATCTTTG 1641
Query 1679 CACCTGACTTGGCCCCAACATAACACAGAGAGACAAAATGGCTGGCTAAGATTTGTG--G 1736
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1642 CACCTGACTTGGCCCCATCATAACACAGAGAGACAAAATGGCTGGCTAAGATTTGTGATG 1701
Query 1737 --TGCGATGATTGTAAACTTGTCTTTGTGGTATATTATTATACCTTTTGTTTTGTCTTCA 1794
|||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1702 GGTGCGATGATTATAAACTTGTCTTTGTGGTATATTAT-A--CCTTTTGTTTTGTCTTCA 1758
Query 1795 TATTTGATTTCAGCTAGTAAAAAGAAGGGACTGCTATGTTTTTAGCCTATATATATACCC 1854
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 1759 TATTTCATTTCAGCTAGTAAAAAGAAGGGACTGCTATGTTTTTGGCCTATATATACATCC 1818
Query 1855 TCCTCCA--A-CATGGATCCATCCTTTT------GAGTGTTGGACTATAACTGCTTGTCG 1905
||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1819 TCCTCCACCAACATGGATCCATCCTTTTCACTTTGAGTGCTGGACTATAACTGCGTGTCG 1878
Query 1906 TTTTCCACCCC-AAAAAACGCTATGGTGTTTGCTCCTCTAGTTCTGAGCAAACTTTGCTG 1964
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TTTTCTACCCCCAAAAAACGCTATGGTGTTTGCTCCTCTAGTTCTGAGCAAACTTTGCTG 1938
Query 1965 TATTTGtttttttGT---C--ATTTTTGGGGTTACATTACATATGTATTAT--T---CCA 2014
||||||||||||| | | |||||||||||||||||||||||||||||| | |||
Sbjct 1939 TATTTGTTTTTTTTTTTTCCCATTTTTGGGGTTACATTACATATGTATTATGATTATCCA 1998
Query 2015 A-A--TCTCGATTGTATTCAGTGGAAATTTTATTTTAAAAT 2052
| | | ||||||||||||||||||| ||||||| ||||||
Sbjct 1999 ACAAATTTCGATTGTATTCAGTGGAAGTTTTATTGTAAAAT 2039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77551738820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5