BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45680.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483704 jgi|Araly1|483704|fgenesh2_kg.4__2764__AT2G45680.1 2425 0.0
> Ahg483704 jgi|Araly1|483704|fgenesh2_kg.4__2764__AT2G45680.1
Length=1622
Score = 2425 bits (1313), Expect = 0.0
Identities = 1545/1651 (94%), Gaps = 40/1651 (2%)
Strand=Plus/Plus
Query 5 GACGTGTAACGCCGTTAAAACGATTCTTTCCCATTGTATCCGCTTTTAACAACTCTCGTC 64
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1 GACGTGAAACGCCGTTAAAACTATTCTTTCCCATTGTATCCGCTTTTAACAACTCTAGTC 60
Query 65 GTCATCTCCACCGTCCGTTTTCTCTCAGCTATATTTTAATGGCGACAATTCAGAAGCTTG 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 61 GTCATCTCCACCGTCCGTTTTCTCTCAGCTATATTTTAATGGCGACGATTCAGAAGCAAG 120
Query 125 AAGAAGTTGCAGGCAAAGATCAAA-CTCTAAGAGCCGTTGATCTAACCATCATCAACGGC 183
||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 121 AAGAAGTTGGAGGCAAAGATCAAAGC-CTAAGAGCCATTGATCTAACCATCATCAACGGC 179
Query 184 GTCAGAAACGTCGAAACTTCAAGACCTTTCCAAGTAAATCCCACAGTGAGTCTCGAGCCC 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTCAGAAACGTCGAAACTTCAAGACCTTTCCAAGTAAATCCCACAGTGAGTCTCGAGCCT 239
Query 244 AAGGCGGAGCCGGTGATGCCGTCGTTTTCAATGTCTTTAGCTCCACCGTCTTCGACAGGA 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 240 AAGGCGGAGCCGGTGATGCCGTCGATTTCAATGTCTTTAGCTCCACCGTCTTCAACGGGA 299
Query 304 CCACCATTGAAGAGAGCTTCGACTAAAGACCGTCACACGAAGGTTGAAGGAAGAGGGAGA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCACCATTGAAGAGAGCTTCGACTAAAGACCGTCACACGAAGGTTGAAGGAAGAGGGAGA 359
Query 364 AGGATACGGATGCCTGCCACGTGTGCGGCTAGGATTTTTCAATTAACTCGAGAGTTAGGT 423
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 AGGATACGGATGCCTGCCACGTGTGCGGCTAGGATTTTTCAACTAACTCGAGAGTTAGGT 419
Query 424 CACAAATCCGACGGCGAAACGATTCGGTGGTTGTTGGAGAACGCTGAGCCGGCGATTATA 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CACAAATCCGACGGCGAAACGATTCGGTGGTTGTTGGAGAACGCTGAGCCGGCGATTATC 479
Query 484 GCCGCCACGGGTACGGGAACGGTTCCCGCCATCGCCATGTCGGTTAACGGAACCTTAAAA 543
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 480 GCCGCCACGGGAACGGGAACGGTTCCCGCCATCGCTATGTCGGTTAACGGAACCCTAAAA 539
Query 544 ATCCCGACGACGACGAACGCTGATTCTGATATGGGTGAAAATCTGATGAAGAAGAAACGT 603
||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 540 ATCCCGACGACAACGAACGCTGATTCTGATTTGGGTGAAAATCCGATGAAGAAGAAACGT 599
Query 604 AAACGACCTTCTAACAGTGAGTATATAGACATAAGCGACGCCGTTTCAGCTTCCTCCGGT 663
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 AAACGACCTTCTAACAGTGAGTATATAGACATAAGCGACGCCGTTTCGGCTTCCTCCGGT 659
Query 664 TTAGCTCCAATTGCCACGACGACAACGATCCAACCTCCGCAAGCTCTGGCATCATCCACT 723
|||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 660 TTAGCTCCCGTTTCCACGACGACAACGACCCAACCGCCGCAAGCTCTGGCATCATCCACC 719
Query 724 GTGGCTCAGCAACTTCTGCCGCAAGGAATGTATCCGATGTGGGCTATTCCATCAAACGCA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTGGCTCAGCAACTTCTGCCGCAAGGAATGTATCCGATGTGGGCTATTCCATCAAACGCA 779
Query 784 ATGATTCCGACGGTCGGAGCTTTCTTCTTGATTCCACAAATCGCTGGTCCGTCGAATCAG 843
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 780 GTGATTCCGACGGTCGGAGCTTTCTTCTTGGTTCCACAAATCACTGGTCCGTCGAATCAG 839
Query 844 CCTCAGTTATTAGCTTTTCCCGCCGCCGCTGCTTCGCCGTCGTCTTACGTCGCCGCTGTT 903
|||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||
Sbjct 840 CCTCAGTTATTAGCTTTTCCGGCCGCGGCCCCGTCGCCGTCGTCTTACGTCGCCGCTGTT 899
Query 904 CAACAGGCTTCCACGATGGCTAGACCACCTCCT-TTACAAGTTGTTCCAAGCAGCGGCTT 962
|| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 900 CAGCAGGCTTCCTCGATGGCTAGACCACCTCCTCTT-CAAGTTGTTCCAAGCAGCGGCTT 958
Query 963 TGTATCCGTTTCAGACGTTAGCGGTTCGAATTTATCAAGAGCGACGTCGGTTATGGCTCC 1022
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 959 TGTATCCGTTTCAGACGTTAGCGGTTCAAATTTATCAAGAACGACGTCGGTTATGGCTCC 1018
Query 1023 GAGCTCAAGCTCAGGCGTAACAACCGGTAGTTCATCGTCAATTGCAACAACAACGACGCA 1082
|||||||||||| ||| |||||| | || |||||||||| | ||||||||||||||| ||
Sbjct 1019 GAGCTCAAGCTCCGGCATAACAATCAGTGGTTCATCGTCTACTGCAACAACAACGACACA 1078
Query 1083 CACGCTGAGAGACTTCTCCCTAGAGATATACGAGAAACAAGAGCTTCACCAGTTCATGAG 1142
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CACGCTCAGAGACTTCTCGCTAGAGATATACGAGAAACAAGAGCTTCACCAGTTCATGAG 1138
Query 1143 CACCACAACAGCACGGTCATCGAACCACTGAAGAAAAGAAAGGAAA-CGGCGGCGTATTA 1201
|||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||| |
Sbjct 1139 CACCACAACAACACGGTCATCGAACCACTGAAGAAAAGAAAGCAAAGCGACGGCGTATGA 1198
Query 1202 GTGATCGGaaaaaaaGCACGTGTGCACATGAAGAAGTGCACGTGTTAAGAAGTGGGCCTC 1261
|||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1199 GTGATCGG--TAAAGGCACGTGGGCACGTGAAGAAGTGCACGTGTTAAGAAGTGGGCCTA 1256
Query 1262 GATTTTAGGCAGAAGTGGGTCAACACGCACCAAAAAGAGAGT-GGAGGGAGG-A-GGAGA 1318
|||||||||||||||||||||||||| |||||||||||||| ||| ||||| | ||| |
Sbjct 1257 GATTTTAGGCAGAAGTGGGTCAACACTTACCAAAAAGAGAGTGGGA-GGAGGAAGGGA-A 1314
Query 1319 GGGGCCACACGGCTCCCACCTTACGCATAGCTTCCGAGGCAGCCAGGTTGGGTGTGGTCC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GGGGCCACACGGCTCCCACCTTACGCATAGCTTCCGAGGCAGCCAGGTTGGGTGTGGTCC 1374
Query 1379 CCAAATGGTTAGAGCTACGTGGTCCGTATGAGTAGGACCAGCTTAAGCTTAAGCATAATT 1438
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 1375 CCAAATGGTTAGAGCTACGTGGTCCGTATGAGTAGGACCAGCTTAAGCATAA---T--TT 1429
Query 1439 CGAAACGTTTCGtttttttGGTGGGGGCTCACCACTTTGTCTTGACTTTTTTGGTCTTTG 1498
||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 -------TTT-G-------GGTGGGGGCTCACCACTTTGTCTTGACTTTTTTGGTCTTTG 1474
Query 1499 TAATTTTACAAAATAAGATTTATTGAAGCCCTCTCTAAGTCATGGTCCACTCAACAACAA 1558
||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TAATTA-ACAAAA-AATATTTATTGAAGCCCTCTCTAAGTCATGGTCCACTCAACAACAA 1532
Query 1559 TTGTGATATTGATGTTTTGATTTTATTAAAATCTGTAACAAAATAAATAT-T-T--CT-A 1613
||| ||||||||||||||||||||||| |||||||||||||||||||||| | | || |
Sbjct 1533 TTGGGATATTGATGTTTTGATTTTATTTAAATCTGTAACAAAATAAATATATCTTTCTTA 1592
Query 1614 TCTAAAATGAAAATACTAATGTTGTTTTCCT 1644
|||||| ||||||| ||||||||||||||||
Sbjct 1593 TCTAAA-TGAAAATTCTAATGTTGTTTTCCT 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5