BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45730.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483709 jgi|Araly1|483709|fgenesh2_kg.4__2769__AT2G45730.1 2366 0.0
Ahg918617 jgi|Araly1|918617|Al_scaffold_0825_1 617 6e-176
> Ahg483709 jgi|Araly1|483709|fgenesh2_kg.4__2769__AT2G45730.1
Length=1564
Score = 2366 bits (1281), Expect = 0.0
Identities = 1379/1427 (97%), Gaps = 3/1427 (0%)
Strand=Plus/Plus
Query 1 AACTAACCAAACATAACTGCAGTCTC---TTCTTGTTTCGATGGAACTCAATAAGGATCA 57
|||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||
Sbjct 1 AACTAACCAAACATAACTGCAGTCTCTTTTTTTTGTTTCGATGGAACTCGATAAAGATCA 60
Query 58 GACAGTCATGTCGGAGGATAAAAAGCCTCAAGATCCAAATCCCAGATTTGCTTGCGAAGG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACAGTCATGTCGGAGGATAAAAAGCCTCAAGATCCAAATCCCAGATTTGCTTGCGAAGG 120
Query 118 TTGCAGCGTTCTGCTCGACATCAACGATGGTGACCGTCTCGTCTTCGCTCGTTTATCTAG 177
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TTGCAGCGTTTTGCTCGACGTCAACGATGGTGACCGTCTCGTCTTCGCTCGTTTATCTGG 180
Query 178 TGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTAAAGCCATTGATCGGAGCTCC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTAAAGCCATTGATCGGAGCTCC 240
Query 238 GTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGTTCTTTCCTCTCTCGCATTCT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGTTCTTTCCTCTCTCGCATTTT 300
Query 298 TCCCATTAAACAAGAAAGTAACAGTAATAATGTTATGGACGATTCGAGAGATAATCGAGA 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TCCCATTAAACAAGAAAATAACAGTAATAATGTTATGGACGATTCGAGAGATAATCGGGA 360
Query 358 AATCGTCGACAATAATGAAGCTCAGAATCTTACTGGTGAAGAAATTGAAGCTATGCGGAG 417
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AATCGTCGACAACAATGAAGCCCAGAACCTTACTGGTGAAGAAATTGAAGCTATGCGGAG 420
Query 418 AGAGGGTGCAAAAGGGGATGAAATTATTGAAGCTCTAATTGCAAACAGCAAAACTTTTGA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 AGAGGGTGCAAAAGGGGATGAAATTATTGAAGCTCTAATTGCAAACAGCAAAACATTTGA 480
Query 478 TAAGAAGTTTCAGTTGTCTCAGGAAAAATATAAGCTTAAAAAGCAGAAGAAATATGCACC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 TAAGAAGTTTCAGTTGTCTCAGGAAAAATATAAGCTTAAAAAGCAGAAGAAATATGCGCC 540
Query 538 AAAGCTGCTTCTTCGACGGCCTTTTGCTCGAAGTATATGTGAAGCTTATTTCAAGAAATA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGCTGCTTCTTCGACGGCCTTTTGCTCGAAGTATATGTGAAGCTTATTTCAAGAAATA 600
Query 598 CCCAGCCAGAATTGGATTCTTACGAGTAGATGCGTTATCTCTTCTGTTAACGATGGCTAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 CCCAGCCAGAATTGGATTCTTACGAGTAGATGCGTTATCTCTTCTGTTAACAATGGCTAA 660
Query 658 TGTCACTGCATACTCGGATGTGCTTGTGGTGGATATGGTTGGTGGCCTTGTCACTGGTGC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTCACTGCATACTCGGATGTGCTTGTGGTGGATATGGTTGGTGGCCTTGTCACTGGTGC 720
Query 718 AGTGGCTGAAAGATTAGGAGGCACTGGTTATGTTTGCAATACATATAAGGGAAGTTCTCC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTGGCTGAAAGATTAGGAGGCACTGGTTATGTTTGCAATACATATAAGGGAAGTTCTCC 780
Query 778 TTATCCTGTGGAGATGGTAAGGATGTTCAACTTTAGTGACAAGGTTTTAAAGAGGATCGT 837
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 781 TTATCCTGTGGAGATGGTAAGGATGTTCAACTTTAGTGACAAGGTTTTAGAGAGGATCGT 840
Query 838 GCAGTCATCGATAAACGAGCTCTCGTCAGCCAAAACTGCGTCTACTGAAGGAAACAATCA 897
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 841 GCAGTCATCGATAAACGAGCTCTCGTCAGCCAATACTGCGTCTCCTGAAGGAAACAATCA 900
Query 898 ACAAGAAGGAGTTTGCAAAGCTGAGAACAATATTAATGAAACAGCTACATCTGATGTTAT 957
||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 901 ACAAGAAGGAGTTTGTAACGCTGAGAACAATATTAATGCAACAGCTACATCTGATATTAT 960
Query 958 GGTTGAAGAAATATCTGTGACAACTGAGGCTGGAGTAGTAGATATTGTTGTACCAGAGAG 1017
||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 GGTAGAAGAAATATCTGCGACAACTGAGGCTGGAGTAGTAGATTTTGTTGTACCAGAGAG 1020
Query 1018 CAAAATTATCAAAGCCGCAAAAGCTGGAGCCAAAGCTTCAAAAGAAACAATAGAGATGTG 1077
|||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1021 CAAAGTTATCAAAGCCGCAAAAGCTGGAGCCAAAGCTTCAAAAGAAACTATTGAGATGTG 1080
Query 1078 GCAAGAAAACGGTTTTTCGAGTCTAATCATGGCTGCGCAAGACCAAGACCCATGGATCGT 1137
|| ||||||||| |||||||| |||||||| ||||||||||||||||||||||||| | |
Sbjct 1081 GCGAGAAAACGGCTTTTCGAGCCTAATCATCGCTGCGCAAGACCAAGACCCATGGAGCAT 1140
Query 1138 AGCTAAGGATGTATTGCCACTACTGTCCTACTCTGCTCCTTTTGCAATATATCATCAGTA 1197
|||||| |||||||||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct 1141 AGCTAAAGATGTATTGCCACTGCTGTCTTACTCTGCTCCCTTTGTAATATATCATCAGTA 1200
Query 1198 TTTACAGCCGCTGGCGACATGTATGCACAAGCTTCAACAGGGTAAAATGGCGATCAATCT 1257
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1201 TTTACAGCCGCTGGCGACATGTATGCACAAGCTTCAACAGGGGAAGATGGCGATCAATCT 1260
Query 1258 GCAAATAACAGAACCATGGCTACGCGAATATCAGGTGCTTCCTTCAAGATCTCACCCTCA 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1261 GCAAATAACAGAACCATGGCTACGCGAATATCAGGTGCTTCCTTCAAGATCTCATCCTCA 1320
Query 1318 CATGCAGATGAGTTCTTTTGGAGGCTATGTTCTGAGTGGCATCAGAATCTCTACCACTTG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CATGCAGATGAGTTCTTTTGGAGGCTATGTTCTGAGTGGCATCAGAATCTCTACCACTTG 1380
Query 1378 ACTGTTGTTTTCATAACCAGAAACTGTGGTTTGATGTTTGGTCTTTT 1424
||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1381 ACTATTGTTTTCAAAACCAGAAACTGTGGTTTGATGTTTGGTCTTTT 1427
> Ahg918617 jgi|Araly1|918617|Al_scaffold_0825_1
Length=384
Score = 617 bits (334), Expect = 6e-176
Identities = 365/380 (96%), Gaps = 1/380 (0%)
Strand=Plus/Plus
Query 38 ATGGAACTCAATAAGGATCAGACAGTCATGTCGGAGGATAAAAAGCCTCAAGATCCAAAT 97
||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAACTCGATAAAGATCAGACAGTCATGTCGGAGGATAAAAAGCCTCAAGTTCCAAAT 60
Query 98 CCCAGATTTGCTTGCGAAGGTTGCAGCGTTCTGCTCGACATCAACGATGGTGACCGTCTC 157
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 61 CCCAGATTTGCTTGCGAAGGTTGCAGCGTTTTGCTCGACGTCAACGATGGTGACCGTCTC 120
Query 158 GTCTTCGCTCGTTTATCTAGTGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTA 217
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCTTCGCTCGTTTATCTGGTGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTA 180
Query 218 AAGCCATTGATCGGAGCTCCGTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGT 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCCATTGATCGGAGCTCCGTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGT 240
Query 278 TCTTTCCTCTCTCGCATTCTTCCCATTAAACAAGAAAGTAACAGTAATAATGTTATGGAC 337
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 241 TCTTTCCTCTCTCGCATTCTTCCCATTAAACAAGAAAATAGCAGTAATAATGTTATGGAG 300
Query 338 GATTCGAGAGATAATCGAGAAATCGTCGACAATAATGAAGCTCAGAATCTTACTGGTGAA 397
||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 GATTCGAGAGATAATCGGGAAATCGTCGACACCAATGAAGCTCAGAACCTTACTGGTGAA 360
Query 398 GAAATTGAAGCTATGCGGAG 417
||||| ||||| ||||||||
Sbjct 361 GAAAT-GAAGCCATGCGGAG 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5