BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45770.2 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg483715 jgi|Araly1|483715|fgenesh2_kg.4__2775__AT2G45770.1 1748 0.0 > Ahg483715 jgi|Araly1|483715|fgenesh2_kg.4__2775__AT2G45770.1 Length=1385 Score = 1748 bits (946), Expect = 0.0 Identities = 1081/1143 (95%), Gaps = 21/1143 (2%) Strand=Plus/Plus Query 30 GCCATGGCAACTTCTTCTGCTCACCTCTCGTTTCTCGCCGGACGTATATCGCCGTTCTCC 89 |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 1 GCCATGGCAACTTCTTCTGCTCACCTCTCGTTTCTCGCCGGACGGATGTCTCCGTTCTCC 60 Query 90 TCCGAACGGATCGGATTATTTCCTCTCAGAGGAGAATTTCGTCCACGAATGACCCGGTTC 149 ||||||||||||| ||||| || | ||||| ||||||||||||| |||| |||||||| Sbjct 61 TCCGAACGGATCGTATTATCCCCACAAAGAGGTGAATTTCGTCCACCAATGTCCCGGTTC 120 Query 150 CGGTGCTCGGCCGGACCGAGCGGATTCTTCACGCGGCTGGGTCGGTTGATTAAGGAGAAG 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGGTGCTCGGCCGGACCGAGCGGATTCTTCACGCGGCTGGGTCGGTTGATTAAGGAGAAG 180 Query 210 GCCAAAAGCGACGTGGAGAAAGTTTTCTCCGGATTCTCTAAGACTAGGGAAAATCTAGCA 269 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 181 GCCAAAAGCGACGTGGAGAAGGTTTTCTCCGGATTCTCTAAGACTAGAGAAAATCTAGCA 240 Query 270 GTCATCGACGAGCTCTTACTCTTCTGGAATCTTGCTGAAACAGACCGAGTTCTTGATGAA 329 ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| Sbjct 241 GTCATCGACGAGCTCTTGCTCTTCTGGAATCTTTCTGAAACAGACCGAGTTCTCGATGAA 300 Query 330 TTGGAAGAGGCGCTTTTGGTTTCTGATTTTGGACCGAAGATTACTGTTAGAATTGTGGAG 389 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 301 TTGGAAGAGGCGCTATTGGTTTCTGATTTTGGACCCAAGATTACTGTTAGAATTGTTGAG 360 Query 390 AGGCTAAGAGAGGATATCATGTCAGGAAAACTCAAATCAGGAAGCGAGATTAAGGATGCA 449 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 AGGCTAAGAGAGGATATCATGTCAGGGAAACTCAAATCAGGAAGCGAGATTAAGGATGCA 420 Query 450 TTGAAGGAAAGTGTGTTGGAGATGCTGGCTAAGAAAAACAGCAAGACAGAGCTTCAATTG 509 ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 421 TTGAAGGGAAGCGTGTTGGAGATGCTCGCTAAGAAAAACAGCAAGACAGAGCTTCAATTG 480 Query 510 GGTTTTAGGAAACCAGCTGTTATAATGATTGTTGGAGTGAACGGAGGTGGGAAGACGACA 569 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 481 GGTTTTAGGAAACCAGCTGTTATAATGATTGTTGGAGTCAACGGAGGTGGGAAGAC--CA 538 Query 570 TCTCTTGATTCTGGCTTTTGTTTTTCAGGAAAGCTGGCTCATAGATTGAAAAATGAAGGA 629 | | ||| | || |||||| |||||||||||||||| ||||||||| Sbjct 539 ---C---A-TCT--C--------TT--GGAAAGTTGGCTCATAGATTGAAGAATGAAGGA 579 Query 630 ACTAAGGTATTAATGGCAGCAGGTGATACATTTAGAGCAGCAGCAAGTGACCAATTAGAG 689 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 580 ACTAAGGTATTAATGGCAGCAGGTGATACATTTAGAGCAGCAGCAAGTGACCAGTTAGAG 639 Query 690 ATATGGGCAGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAGGAGACAAGGCTAAAGCA 749 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 640 ATATGGGCAGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAGGAGAGAAGGCTAAAGCA 699 Query 750 GCCACGGTTCTCTCAAAGGCTGTGAAAAGGGGGAAGGAGGAAGGTTATGATGTTGTACTG 809 || || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 700 GCAACAGTTCTCTCAAAGGCTGTTAAAAGGGGGAAGGAGGAAGGCTATGATGTTGTACTG 759 Query 810 TGCGACACATCTGGACGTCTCCATACTAATTACAGTTTGATGGAGGAGTTGATTGCGTGC 869 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 760 TGTGACACATCTGGACGTCTTCATACTAATTACAGTTTGATGGAGGAGTTGATTGCGTGC 819 Query 870 AAAAAAGCAGTGGGCAAGATTGTCTCTGGTGCACCTAATGAGATCCTACTTGTCCTTGAT 929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 820 AAAAAAGCAGTGGGCAAGATTGTCTCTGGTGCACCTAATGAGATCCTACTTGTCCTTGAT 879 Query 930 GGAAACACTGGTTTGAACATGCTTCCACAAGCTAGAGAATTCAACGAGGTTGTTGGTATC 989 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 880 GGAAACACTGGTTTGAACATGCTTCCGCAAGCTAGAGAATTCAACGAGGTTGTTGGTATT 939 Query 990 ACCGGTTTGATATTGACGAAACTAGATGGCTCTGCTAGAGGAGGCTGTGTGGTCAGTGTG 1049 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 940 ACCGGTTTGATATTGACGAAACTAGATGGCTCTGCTAGAGGAGGTTGTGTGGTCAGTGTG 999 Query 1050 GTTGAGGAATTGGGCATTCCCGTAAAGTTTATCGGTGTAGGAGAAGCTGTAGAAGATCTC 1109 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1000 GTTGAGGAATTGGGCATTCCCGTAAAGTTTATCGGAGTAGGAGAAGCTGTAGAAGATCTC 1059 Query 1110 CAACCTTTTGATCCGGAGGCTTTTGTGAATGCTATATTCTCTTAAGCCATAAAACCTCGT 1169 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1060 CAACCTTTTGATCCGGAGGCTTTTGTGAATGCTATATTCTCCTAAACCATAAAACCTCGT 1119 Query 1170 CTT 1172 ||| Sbjct 1120 CTT 1122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5