BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45820.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483720 jgi|Araly1|483720|fgenesh2_kg.4__2780__AT2G45820.1 1288 0.0
> Ahg483720 jgi|Araly1|483720|fgenesh2_kg.4__2780__AT2G45820.1
Length=899
Score = 1288 bits (697), Expect = 0.0
Identities = 841/904 (93%), Gaps = 35/904 (4%)
Strand=Plus/Plus
Query 1 ATAAGCTAACGGAGGATATAAAAACTCTTTAACTCATTATTGT-CCTAAAATCTCAATTT 59
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1 ATAAGCTAACGGAGGATATAAAAACTCTTT-TCTCATTATT-TCCCTAAAATCTCAATTT 58
Query 60 TATCC---------ATTTTC-ACGGAAAAAACA-TAAAATCTGTTCTTCTTCTTCGGCTG 108
||||| |||||| | |||||||| | ||||||||||||||||||||||||||
Sbjct 59 TATCCGGTTGTTTTATTTTCTAAGGAAAAAA-ATTAAAATCTGTTCTTCTTCTTCGGCTG 117
Query 109 AGAGACAATGGCGGAGGAGCAAAAGACGAGTAAGGTTGACGTAGAATCTCCGGCTGTTTT 168
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 118 AGAGACAATGGCGGAGGAGCAAAAGACGAGTAAGGCTGACGTAGAATCTCCGGCGGTTTT 177
Query 169 AGCTCCGGCGAA-GGAACCGACTCCTGCTCCGGTGGAAGTCGCGGATGAGAAAATTCATA 227
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGCTCCGGC-AACGGAACCGACTCCTGCTCCGGTGGAAGTCGCGGATGAGAAAATTCATA 236
Query 228 ATCCACCTCCCGTCGAGTCCAAAGCTCTTGCCGTTGTAGAAAAACCCATCGAGGAGCATA 287
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 237 ATCCACCTCCCGTCGAGTCCAAAGCTCTGGCCGTTGTAGAAAAACCCATCGAGGAGCATA 296
Query 288 CACCTAAGAAAGCTTCATCTGGTTCGGCCGATAGAGATGTGATACTTGCCGACTTGGAAA 347
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CACCGAAGAAAACTTCGTCTGGTTCGGCCGATAGAGATGTGATACTTGCCGACTTGGAAA 356
Query 348 AAGAGAAGAAAACGTCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGA 407
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGGAGAAGAAAACGTCATTCATCAAAGCATGGGAAGAGAGTGAGAAGTCAAAGGCTGAGA 416
Query 408 ACAGGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAAAATAGCAAGAAAGCAGCCG 467
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 417 ATAGGGCACAAAAGAAGATCTCTGATGTGCATGCTTGGGAGAATACCAAGAAAGCAGCCG 476
Query 468 TAGAAGCTCAACTTAGGAAGATCGAGGAAAAATTAGAGAAGAAAAAAGCGCAGTACGGTG 527
||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| ||||
Sbjct 477 TAGAAGCTCAACTCAGGAAGATCGAAGAAAAACTAGAGAAGCAAAAAGCACAGTATGGTG 536
Query 528 AGAAAATGAAGAACAAAGTAGCTGCAATCCACAAGTTAGCAGAAGAGAAGAGAGCAATGG 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGAAAATGAAGAACAAAGTAGCTGCAATCCACAAGTTAGCAGAAGAGAAGAGAGCAATGG 596
Query 588 TTGAAGCTAAAAAAGGAGAAGAGCTTCTCAAAGCTGAAGAAATGGGTGCTAAGTATAGAG 647
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGAAGCTAAGAAAGGAGAAGAGCTTCTCAAAGCTGAAGAAATGGGTGCTAAGTATAGAG 656
Query 648 CCACTGGTGTAGTACCAAAGGCAACGTGTGGATGTTTCTAAGCCTTTATTGAATTTGT-- 705
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 657 CCACTGGTGTAGTACCAAAGGCAACTTGTGGATGTTTCTAAGTCTTTATTGAATTTGTTT 716
Query 706 ---A--TCT-T-T--GTAA-CAATTCAtctctgtttctttcttcttcttttgttttt--g 753
| ||| | | |||| |||||||||||||||||||||||||| |||| ||||| |
Sbjct 717 CTCAGGTCTATGTTTGTAAACAATTCATCTCTGTTTCTTTCTTCTTTTTTTTTTTTTTTG 776
Query 754 tgtgattcaacaactctttt-tagtttttg-ttatttgtttggtcgtttgtgtcttgttt 811
||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 777 TGTGATTCAACAACT-TTTTATAGTTTTTGGTTATTTGTTTGGTTGTTTGTGTCTTGTTT 835
Query 812 ACATATTGGGTGATTGTGTGTAAAAGTGAAAGATTA-ATGGAGTATAATTGTATGAAGCA 870
|||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 836 ACATATTGGGTGCTTTTGTGTAAAAGTGAAAGATTTTATGGAGTATAATTCTATGAAGCA 895
Query 871 TCAA 874
||||
Sbjct 896 TCAA 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5