BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45850.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483725 jgi|Araly1|483725|fgenesh2_kg.4__2785__AT2G45850.1 2196 0.0
> Ahg483725 jgi|Araly1|483725|fgenesh2_kg.4__2785__AT2G45850.1
Length=1712
Score = 2196 bits (1189), Expect = 0.0
Identities = 1558/1717 (91%), Gaps = 102/1717 (6%)
Strand=Plus/Plus
Query 1 CATTAGGATTTTGAATTTCCAAATACATTTTCAGaaaaaaaaGAATTAAAAGATCCCATT 60
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1 CATTAGGATTTTGAATTTCCAAATACATTTTCAGAAAAAAGAGAACTAAAAGATCCCATT 60
Query 61 GTTGTTATCCTCACAGTAAATGCTTTTGCTTGAGAGAGAG-TCTGTTAGAGGTTTTTTGT 119
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 GTTGTTATCCTCACAGTAAATGCTTTTGCTTGAGAGAG-GTTCTGTTAGAGGTTTTTTGT 119
Query 120 TTGTTTCTGTTTCCTTCTGTCACCCAGAAAACTAAAAAGCAAACAAATTCAAGAagagag 179
||| |||||||||||||||||||||||||||| |||| || ||||||| | |||
Sbjct 120 TTGCTTCTGTTTCCTTCTGTCACCCAGAAAAC--AAAA--AAGCAAATTC----A-AGA- 169
Query 180 agagagagagaTAGCCTCAAAACCAAGTCCTAACCATTGTTGATAGAAGAGAAAGCTTTT 239
|||||||||||||| | || || |||||||||| ||||||||||||||||||
Sbjct 170 AGAGAGAGAGATAG---C---ACTAA-----AACCATTGTT-ATAGAAGAGAAAGCTTTT 217
Query 240 CTTTTCTTGTTGCTTATGGTgaaagaatgaaagagagagaggaggagaagtaagaagcag 299
| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct 218 C-TTTCTTGTTGCTTATGGTGAAAGAATG-AA-AGAGAGA-GAGGAGAAGTAAGAAGCTG 273
Query 300 agaaagTGTTTAGAGCTTTGCATGTTCCTTTCTCTCCAAGTTTATATCTTCATCGGTTTC 359
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 274 AGAAAGTGTTTAGAGCTTTGCATGTTCCTTTCTCGCCAAGTTTATATCTTCATCTGTTCC 333
Query 360 ACAAGTTCACTTAAAAAGTTGAAAAGAGTCTTTCTTCTTCAACTATTGTAAATGCGAAAT 419
|||| ||||||| | ||||||||| | ||||||||||| ||||||||| ||||
Sbjct 334 ACAATTTCACTT----A----AAAAGAGTC--T-TTCTTCAACTACTGTAAATGCAAAAT 382
Query 420 GGATCGAAGAGATGCAATGGGATTATCCGGGTCAGGTTCTTACTATATCCATAGAGGATT 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 383 GGATCGAAGAGATGCAATGGGATTATCCGGGTCGGGTTCTTACTATATCCATAGAGGATT 442
Query 480 ATCCGGGTCGGGTCCTCCAACGTTTCATGGATCACCACAGCAACAGCAAGGTCTTCGTCA 539
||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||
Sbjct 443 ATCCGGGTCGGGTCCTCCAACGTTTCACGGATCATCACAG---CAGCAAGGGCTTCGTCA 499
Query 540 CTTACCTAATCAAAACTCTCCATTCGGGTCAGGCTCCACTGGTTTCGGATCTCCTTCTTT 599
|||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 500 CTTACCTAATCAAAACTCTCCATTCGGGCCAGGCTCCACTGGTTTCGGA------TC--T 551
Query 600 ACACGGTGATCCTTCTCTGGCAACAGCAGCCGGAGGAGCCGGAGCTCTTCCTCATCATAT 659
| | | | | || | |||||| || ||||||||||||||||||||||||||||||||
Sbjct 552 -C-C--T--T-C-TC-C-GGCAACTGCGGCCGGAGGAGCCGGAGCTCTTCCTCATCATAT 601
Query 660 CGGCGTTAATATGATTGCTCCTCCTCCACCTCCCAGTGAAACTCCGATGAAACGAAAGAG 719
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 602 CGGCGTTAATATGATTGCTCCTCCGCCACCTCCTAGTGAAACTCCGATGAAACGAAAGAG 661
Query 720 AGGACGGCCTAGAAAATACGGTCAAGACGGCT-CTGTTTCTTTGGCTCTGTCGTCTTCCT 778
|||||| |||||||||||||| |||||||| | ||||||||||||| |||||||||||||
Sbjct 662 AGGACGTCCTAGAAAATACGGACAAGACGG-TCCTGTTTCTTTGGCACTGTCGTCTTCCT 720
Query 779 CTGTTTCGACCATTACTCCCAACAACTCTAACAAACGCGGCCGTGGTCGACCTCCGGGCT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 CTGTTTCGACCATTACTCCCAACAACTCTAACAAACGCGGCCGTGGTCGACCTCCGGGTT 780
Query 839 CCGGCAAGAAACAGAGAATGGCTTCCGTTGGTGAACTGATGCCTTCATCTTCTGGAATGA 898
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 781 CCGGCAAGAAACAGAGAATGGCTTCCATTGGTGAATTGATGCCTTCATCTTCTGGAATGA 840
Query 899 GCTTCACGCCACATGTTATCGCGGTTTCAATAGGAGAAGATATTGCATCAAAGGTTATAG 958
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCTTCACGCCACACGTTATCGCGGTTTCAATAGGAGAAGATATTGCATCAAAGGTTATAT 900
Query 959 CTTTCTCTCAACAAGGTCCGAGAGCCATTTGCGTTTTATCTGCAAGTGGTGCAGTCTCTA 1018
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTTCTCTCAACAAGGTCCAAGAGCCATTTGCGTTTTATCTGCAAGTGGTGCAGTCTCTA 960
Query 1019 CTGCAACACTTATTCAACCATCAGCATCTCCCGGAGCCATTAAATACGAGGGCCGGTTTG 1078
||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 961 CTGCAACACTTCTTCAACCATCAG---CTCCCGGAGCTATTAAATACGAGGGCCGGTTTG 1017
Query 1079 AAATCCTAGCGTTATCAACATCTTATATAGTGGCAACTGATGGAAGCTTCCGTAACCGAA 1138
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1018 AAATCCTAGCGTTATCAACATCTTATCTAGTGGCAACTGATGGAAGCTTCCGTAATCGAA 1077
Query 1139 CTGGAAACTTATCGGTTTCGCTTGCTAGCCCCGATGGGCGTGTGATTGGCGGTGCCATTG 1198
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 CTGGAAACTTATCGGTTTCTCTTGCTAGCCCCGATGGGCGTGTGATTGGTGGTGCCATTG 1137
Query 1199 GTGGGCCTTTAATAGCTGCAAGTCCTGTTCAGGTTATTGTAGGGAGCTTTATATGGGCAG 1258
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1138 GTGGGCCTTTAATAGCAGCAAGTCCTGTTCAGGTTATAATAGGGAGCTTTATATGGGCAG 1197
Query 1259 CTCCAAAGATCAAGAGCAAGAAACGAGAAGAAGAAGCTTCTGAAGTTGTTCAAGAAACTG 1318
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1198 CTCCAAAGATCAAGAGCAAGAAACGAGAAGAAGATGCTTCTGAAGTTGTTCAAGACACTG 1257
Query 1319 ATGATCACCACGTTCTGGACAATAATAACAACACGATTTCGCCTGTCCCTCAGCAGCAGC 1378
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATGATCATCACGTTCTGGACAATAATAACAACACGATTTCGCCTGTCCCTCAGCAGCAGC 1317
Query 1379 CAAACCAAAACCTGATTTGGTCAACAGGTTCAAGGCAAATGGATATGCGTCATGCTCATG 1438
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CAAGCCAAAACCTGATATGGTCAACAGGTTCAAGGCAAATGGATATGCGTCATGCTCATG 1377
Query 1439 CTGATATTGATTTAATGCGC----G--G-T--TGATGATAGCGAGAAAGAACTCTGTGTA 1489
|||||||||||||||||||| | | | ||||||||||| ||||||||||||||||
Sbjct 1378 CTGATATTGATTTAATGCGCGGTTGATGATGATGATGATAGCGGGAAAGAACTCTGTGTA 1437
Query 1490 TATAAAGCATGGAATCTAGGAAGAAGAAGAAGGAATATAAGCTAACCTCTGAACAAAAGT 1549
||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1438 TATAAAGCATGGAATCTAGGAAGAAGAAGAAGGAATATAAGCTAA-C-CT---C------ 1486
Query 1550 ATGTGGAAATGTTAGGGAAAAAGATTATGTGGAAATGTTAGGGAAAAAGATTAACTCTAT 1609
| | | | ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1487 ---T-G--A----A---CAAAAG--TATGTGGAAATGTTAGGCAAAAAGATTGACTCTAT 1531
Query 1610 TAGTGTACCTCTCATATCTCTAAGCTTGTTTGGTTTTACTGTTTCT-GTGACTCTGAAGA 1668
|||||||||||||| |||| ||||||| ||||||||| ||||| | |||||||||||||
Sbjct 1532 TAGTGTACCTCTCAAATCTATAAGCTTATTTGGTTTTGTTGTTT-TAGTGACTCTGAAGA 1590
Query 1669 TTTGCAGAGTTCCTTTCTTTCTCTGTTTTAGATTGTT 1705
||||||||||||||| ||||||| ||| ||||||||
Sbjct 1591 TTTGCAGAGTTCCTTGATTTCTCTATTTCAGATTGTT 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5