BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45920.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483732 jgi|Araly1|483732|fgenesh2_kg.4__2792__AT2G45920.1 2470 0.0
> Ahg483732 jgi|Araly1|483732|fgenesh2_kg.4__2792__AT2G45920.1
Length=1678
Score = 2470 bits (1337), Expect = 0.0
Identities = 1586/1701 (93%), Gaps = 38/1701 (2%)
Strand=Plus/Plus
Query 1 GGTTGACTTCGTGTGCATGTTATAACATAAGAAAATGTTCTTGCTTGTTGATTGCTCCCT 60
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GGTTGACTTCGTATGCATGTTATAACATAAGAAAATGTTCTTGTTTGTTGATTGCTCCCT 60
Query 61 CTGTTAGAT-AAGTCATCTCTTTTCTCGTATTGC--AAATTTTAAGTTTGTTCTTGTTTA 117
|||||| || || ||||||||||||| ||||||| ||| |||| ||||||||||||| |
Sbjct 61 CTGTTAAATCAA-TCATCTCTTTTCTTGTATTGCAAAAAATTTATGTTTGTTCTTGTTCA 119
Query 118 TTCTCTTGAGTGAATTAGAGGTATGTTTTGAGTGTTCTCATATGGAGTGTGTTGGAGATA 177
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 120 TTCTCTTGAGTGAATTAGAGGAATGTTTTGAGTG-TCTCATATGGAGTGTGTTGGAGAAA 178
Query 178 GGAGCTTCGATCCAAGCAAAGGGGAAAAGTGTTGGCTTCATGAGGCTTCGATGCAGCCTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 GGAGCTTCGATCCAAGCAAAGGGGAAAAGTGTTGGCTTCATGAGGCTTCGATGCAGCGTT 238
Query 238 AAACGCTAAAATCCAGGCCAAGCAAGATGGAGATAGAGAGAGATGATGGGCAAATCAGGT 297
||||||| |||| ||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct 239 AAACGCT-GAATCTAGGCCAATCAAGAGGGTGATAGAGAGAGATGATGGGCAAACCAGGT 297
Query 298 TCGCAGCAGCTGCTGATGGATGAGAAGATATATGTTGCAGTGGGGAGTGACTTGGGGAAC 357
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCGCTGCAGCTGCTAATGGATGAGAAGATATATGTTGCAGTGGGGAGTGACTTGGGGAAC 357
Query 358 AAGTCCACTCTTGTTTGGGCGATACAGAACACTGGAGGCAAGGAGTTCTGTATCGTCCAC 417
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 AAGTCCACTCTAGTTTGGGCGATACAGAACACTGGAGGTAAGGAGTTCTGTATCGTCCAT 417
Query 418 GTTCACCAGCCACTCTACAGAAAAGAAAAGGAAAAGACACAAAAGATCCTGGACAAATAC 477
||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 418 GTTCACCAGCCGCTCTACAGAAAAGACAAGGAAAAGGCACAAAAGATCCTGGACAAGTAC 477
Query 478 CTACAAAAATGCAGGCAAATGCAGGTCTGTGCTGAGATGATACACATTAAAATGGAGTCG 537
||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 478 CTACAAACATGCAGGCAGATGCAGGTCTGTGCTGAGACGATACACATCGAAATGGACTCG 537
Query 538 GTAGAGAAAGGGATCATCCAATTGATCTCAGAGCGCAATGTCAAGAAGCTCGTCATGGGA 597
|||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 538 GTAGAGGAAGGTATCATCCAATTGATCTCAGAGCGCAACGTTAAGAAGCTCGTCATGGGA 597
Query 598 GCTGCGTCAGACACACGCTATTCAATGAGGATGGCAGATCTGTTGTCCACGAAAGCCATT 657
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCTGCATCAGACAGACACTATTCAATGAGGATGGCAGATCTGTTGTCCACGAAAGCCATT 657
Query 658 TACATTCGTCAAGAAGCGCCTGCTACTTGTTGTATATGGTTTACTTGCAAAGGATACCTG 717
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TACATTCGTCAAGAAGTGCCTGCTACTTGTTGTATATGGTTTACTTGCAAAGGATACCTG 717
Query 718 GTATATAAAAGGGAATCTATCATGGGCAACACCTCTCTAGAGTATGCATCTACAAGTTCT 777
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GTATATAAAAGGGAAGCTATCATGGGTAACACCTCTCTAGAGTATGCATCTACAAGTTCT 777
Query 778 GGTCAAGATTCAGTCCGTTCACGAGGATCTGTTATACCTTCGCGCCAATTCACGATATCT 837
| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 778 GATCAAGATTCAGTCCGTTCACGAGGATCTGTTATACCTTCGGGCCAATACACGATATCT 837
Query 838 AGAGGAAATGGAAATGTGTATCAGTTAGCTGTCTTTGAAGCTGAGAAATCGAAAAAAGAA 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 AGAGGAAATGGAAATGTGTATCAATTAGCTGTCTTTGAAGCTGAGAAATCGAAAAAAGAA 897
Query 898 GCAAGCTTGGAGGCTTTCAAGCATCAAGAAGTTGTAAAAGAGAAAAATGAAGCAATCAAA 957
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 898 GCAAGCTTGGAGGCTTTCAAGCATCAAGAAGTTGAAAAAGAGAAAAATGAAGCAATCAAA 957
Query 958 AGGGGTAAAGAATGGGAAAGTGCCTATTTGGAGGAGTTGAAACAAAGGAAAGAAACAGAG 1017
|||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 958 AGGGCTAAAGAATGGGAAAATGCCTATTTCGAGGAGTTGAAAGAAAGGAAAGAAACAGAG 1017
Query 1018 ATGGAGCTGAAGAAAGTGAGAGAAAAACTCGAAAAGATGAGGTATATATCTGAGAACCGA 1077
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 ATGGAGCTGAAGAAAGTGAGAGAAAAACTCGAAAATATGAGGTATATATCTGAGAACCGA 1077
Query 1078 ATAACCGAGTCTTATATGTTGGTACAAAAGCTGCAAGACAAGTATAACTTGGCAACGAAA 1137
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATAACCGAGTCTTATATGCTGGTACAAAAGCTGCAAGACAAGTATAACTTGGCAACGAAA 1137
Query 1138 GTGTTGAGAAAAGCCAAGGAAGAACGAGATTTATTGATTAAAGGACGCGACATAGCAATT 1197
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 1138 GTGTTGAGAAAAGCCAAGGAAGAACGGGATAGATTGATAAAAGGACGCGACATAGCAATT 1197
Query 1198 ATAGAAGTAGAGGAGCTAAGAAAA------GAG--G-TCTCTCGATCTGATGAGCACCGT 1248
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 1198 ATAGAAGTAGAGGAGCTAAGAAAAATCCATGAGAAGGTCTCTCGATCTGATGAGCACCGT 1257
Query 1249 GAAGCTCCTCAGTACTTCATCTGTCCCATTTCACTGGAAGTGATGAAGGATCCACAACTA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAAGCTCCTCAGTACTTCATCTGTCCCATTTCACTGGAAGTGATGAAGGATCCACAACTA 1317
Query 1309 GCAGCAGATGGATTTACATATGAAGCAGAAGCCATAAGTACATGGCTTCAGGGAGGACAT 1368
||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct 1318 GCATCAGATGGATTTACATATGAAGCAAAAGCCATAAGCACATGGCTTCAGAGAGGACAT 1377
Query 1369 GAGACTTCCCCAATGACAAACACGAAGCTTCATCATACAAAGTTAGTTCCAAATCTTGCT 1428
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1378 GAGACTTCCCCAATGACAAACAAGAAGCTTCTTCATACAAAGTTAGTTCCAAATCTTGCT 1437
Query 1429 CTTCGATCTGCAATCCAGGAATGGCTTCACGCTTCATCCTCTTTTAGAAAGTGAACAGAA 1488
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1438 CTTCGATCTGCAATCCAGGAATGGCTTCACGCTTCATCCTCTTCCAGAAAGTGAATAGAA 1497
Query 1489 ATAAAATCACACTAAATATATATTCTTAAGCATTTGCTTCAACGAACACGTCTA--CTTG 1546
|||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1498 ATAAAATCACACTAAA-ATATATTCTTAAGCATTTGCTTCAACGGACTCGTCTCTGCTTG 1556
Query 1547 TACTTTATATTAAACCCATGTAATGAAAAACCttttcttcatttttctctccat-tttct 1605
|| | ||||||||||| ||||||| |||| ||| | | | || ||| |
Sbjct 1557 TAATGTATATTAAACCGATGTAAT--------TTTT-TTC-T----C-C---ATGTTT-T 1597
Query 1606 atttattttctTAGTAATACAATCTGACCATATGTATTACGTTGAAAACAGCCAATTAAC 1665
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1598 ATTTATTTTCTTATTAATACAATCTGACCATATGCATTACGTTGAAAACAGCTAATTAAC 1657
Query 1666 GAAATAAAATATGAAAAGATA 1686
|||||||||| || | |||||
Sbjct 1658 GAAATAAAATTTGTATAGATA 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5