BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46160.1 Length=803 Score E Sequences producing significant alignments: (Bits) Value Ahg483761 jgi|Araly1|483761|fgenesh2_kg.4__2821__AT2G46160.1 1147 0.0 > Ahg483761 jgi|Araly1|483761|fgenesh2_kg.4__2821__AT2G46160.1 Length=799 Score = 1147 bits (621), Expect = 0.0 Identities = 742/800 (93%), Gaps = 9/800 (1%) Strand=Plus/Plus Query 9 CTTCTTCTTTACCATCAAATGTCAACACTCGCCTCCTCCGCCTCCGTCTTCCTAGTCCAC 68 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 CTTCTTCTTTACCATCAAATGTCAACAGTCGCCTCCTCCGCCTCCGTCTTCCTAGTCCAC 60 Query 69 CCTCCCCTTCCACCGTCGCCACCACAAGCAGGCAACCACTCTTACCTCACAACTCTAGGC 128 ||||| |||||||||||||||| || | ||||||||||||||||| |||||||||||| Sbjct 61 CCTCCTTTTCCACCGTCGCCACCGCACGGTGGCAACCACTCTTACCTTACAACTCTAGGC 120 Query 129 TTTGGCTACTCCATAGCCATAGCTCTCGGTTTTCTCGTCCTTCTCTCGACCGTCCTTTTA 188 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || Sbjct 121 TTTGGCTACTCCATAGCCATAGCTCTCGGTTTCCTCGTCCTTCTCTCAACCGTCCTTCTA 180 Query 189 TCCTCATACATCTGTTGCCGTGACTCTCGCCGCCGCACAACCGCCGTGGAATCCACAGGC 248 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 TCCTCATACATATGTTGCCGTGACTCTCGCCGCCGCACAACCGCCGTGGAATCCGCAGGA 240 Query 249 GATCGTGGCGGAAGTGTAATCCTCCCCCGCATAATCTTTGTCGCCGAGGAAGACAATGAA 308 || |||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| Sbjct 241 GACCGTGGCGGAAGTGTAATCCTTCCTCGCATAATCTTCGTCGCCGAAGAAGACAATGAA 300 Query 309 GATCTCGAAGCAGGTGATGTCGTGGTGGGACTTGATCAAGCCGTCATCAACTCATACCCT 368 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 301 GATCTCGAAGCAGGTGATGTCGTCGTGGGACTCGATCAAGCCGTCATCAACTCTTACCCT 360 Query 369 AAGTTCCACTTTTCCAAAGATACCTCCGCCGCGTCCTCAGATGGCTTTGGTGGCGGAGGA 428 ||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||| Sbjct 361 AAGTTCCACTTTTCCAAAGATTCCTCCGCGGCTTCCTCTGATGGCTTTGGTGGCGGAGGA 420 Query 429 GACACAACGTGCTCGATCTGTTTATGTGAGTATAAAGAAGCGGAGATGCTGAGGATGATG 488 || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 GATACGACGTGTTCGATCTGTTTGTGTGAGTATAAAGAAGCGGAGATGCTGAGGATGATG 480 Query 489 CCGGAGTGTAAACACTACTTCCATTTGTGTTGCCTTGATGCGTGGCTTAAACTCAACGGA 548 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 CCCGAGTGTAAACACTACTTCCATTTGTGTTGTCTTGATGCGTGGCTTAAACTCAACGGA 540 Query 549 TCTTGTCCCGTTTGTCGGAACTCGCCGCTTCCAACGCCGACTTCAACGCCTCTGTCAACG 608 |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 541 TCTTGTCCCGTTTGTCGGAACTCGCCGCTTCCGACGCCGACATCAACGCCTCTGTCAACA 600 Query 609 CCTTTGTCAGAAGTTGTGCCTCTCTCCCAGTACGCGGCCGATCGGAGGAGAGCAAGAAGA 668 |||||||| ||||||||||| || || |||||||| ||||||||||||||||| |||||| Sbjct 601 CCTTTGTCGGAAGTTGTGCCGCTTTCACAGTACGCCGCCGATCGGAGGAGAGCGAGAAGA 660 Query 669 TGATATTATTATTACATAGATCCATTCGCCTAA--A-TTAGGGTAATTCCTATTTATTAT 725 ||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||| Sbjct 661 TGATATTATTATTACATAGATCCATTCGCCTAATTAATTAGGGTAATTCCTAGT-ATTAT 719 Query 726 TTTTGCTCCGTTTCATTACAACTTTACTGATTT-GTAATTa--aa--aaaaaTCCGTCAA 780 |||||||||||||||| ||||| || |||||| || ||| || ||||||||||||| Sbjct 720 TTTTGCTCCGTTTCATCACAACGTTCCTGATTCAGTGATTTGTAATTAAAAATCCGTCAA 779 Query 781 AAGTGGAGTTTGCCATTAAT 800 ||||||||| |||||||||| Sbjct 780 AAGTGGAGTATGCCATTAAT 799 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29659629426 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5