BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46420.1
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483796 jgi|Araly1|483796|fgenesh2_kg.4__2856__AT2G46420.1 1842 0.0
Ahg486659 jgi|Araly1|486659|fgenesh2_kg.5__2651__AT3G61700.2 913 0.0
> Ahg483796 jgi|Araly1|483796|fgenesh2_kg.4__2856__AT2G46420.1
Length=1723
Score = 1842 bits (997), Expect = 0.0
Identities = 1297/1434 (90%), Gaps = 52/1434 (4%)
Strand=Plus/Plus
Query 268 GTGTTGTTTTTACTAGCTCTGAATCTTTAGAGGGCTCAAAAATTCGTCGAGAAAACCAGT 327
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||
Sbjct 192 GTGTTGTTTTTACTAATTCTGAATCTTTAGAGGGCCCAAAAATTCGTCGAG-AAATCTGT 250
Query 328 CTTTGGAAGTGTAGCATTTTGGATTCGCT-TGTGACTTGAATCTTGAATATTA--GGTTT 384
| ||||||||||||||||||||||| | | ||| || || |||| | | | |||
Sbjct 251 C-TTGGAAGTGTAGCATTTTGGATTAAATCT-TGAATTTAA-GGTGAA-ACCACCGTTTT 306
Query 385 CTATTTGGTCAACAACATCAGAAACATGTGTGCTCAGATGTTGAGCTCTTTAGATTCAAT 444
||||||||||||||||||||||||||| ||||||||| || || | ||
Sbjct 307 GTATTTGGTCAACAACATCAGAAACATGCGTGCTCAGA-----AG----TT-G-----AT 351
Query 445 TGTTGTGAACATTGTCAAGGAGAATAG-TGATTATTGAAGGATGCAAGATTTTTATATTC 503
|||||||||| |||| |||| | |||| || | ||||||||||||| ||||||||||||
Sbjct 352 TGTTGTGAACGTTGTTAAGGTGCATAGTTG-TCATTGAAGGATGCACGATTTTTATATTT 410
Query 504 AGCTCTAATGAAGAACGGACAGGAGTTGCAGTCTTCTACCCAAGTTTCACATGAGTCCCA 563
||||| |||||||||| || | || | | ||||||||||||||||||| |||||||||
Sbjct 411 AGCTCCAATGAAGAAC-GA-A-CAG-T-C-TTCTTCTACCCAAGTTTCACTTGAGTCCCA 464
Query 564 AGGTGAACAGAAAGTTAATTTATCAGTAGAAGCTCCAATACAAGATTCTGGTTCTGTATC 623
||||||||| ||||||||| |||| ||||||| || |||||||||||||||||||||||
Sbjct 465 AGGTGAACAAAAAGTTAATCAATCAATAGAAGCCCCTATACAAGATTCTGGTTCTGTATC 524
Query 624 TGCCTCAAGTAATGACGGTAGGAAAGTGTCAAGACAAGATATTGAACTTGTCCAAAATTT 683
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 525 TGCCTCAAGTAATGACGGTAGGAAAGTTTCAAGGCAAGATATTGAACTTGTCCAAAATTT 584
Query 684 GATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGT-AAAGACACTCTTGA 742
||||||||||||||| ||||||||||||| ||||||||||||||| ||| || |||||||
Sbjct 585 GATAGAAAGATGTCTTCAGTTGTACATGAACAGAGATGAGGTCGTCAAA-ACCCTCTTGA 643
Query 743 CCCGTGCAAGGATTGACCCTGGTTTTACAACATTAGTATGGCAAAAACTGGAAGAAGAAA 802
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 644 CCCGTGCAAGGATTGACCCTGGTTTTACAACCTTAGTATGGCAGAAACTGGAAGAAGAAA 703
Query 803 ACGCAGAGTTTTTCAGGGCATATTACATCAGACTGAAACTGAAGAAGCAAATAGTTGTAT 862
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 704 ACGAAGAGTTTTTCAGGGCATATTACATCAGGCTGAAACTGAAGAAGCAAATAGTTGTAT 763
Query 863 TCAATC-ATTTGCTTGAGCATCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTT 921
|||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 764 TCAA-CTATTTGCTGGAGCACCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTT 822
Query 922 CCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTGTGAACAACATGCCCATG 981
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 823 CCTCTGGTCCCGATGCAGAACGGTATTCATCCCATGGCATCTGTGAACAACATGCCCATG 882
Query 982 GGATACCCAGTACTACAACATCCTCAGATGCATGCTCAAGGTCATCCCCATCTTGATCCT 1041
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 883 GGATATCCAGTACTACAACATCCACAAATGCATGCTCAAGGTCATCCCCATCTTGATCCA 942
Query 1042 ATGAGCTGTGGAATGTCAAGCTGCCATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ATGAGCTGTGGAATGTCAAGCTGCCATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTC 1002
Query 1102 CAACCAATGAGGATCAACTCAGGGAATGATATGGTAATAGATACAACCATGGCTGAACCA 1161
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1003 CAACCAATCAGGATCAACTCAGGGAATGATATGGTAATAGATACAACCATGGCTGAGCCA 1062
Query 1162 ACTCCAATGATTCCACCAAATAGTGGTATGTCGGATATGCCAGTAAGTCCAGCTTCTGTG 1221
||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||
Sbjct 1063 ACTCCAATGATTCCACCAAGCAGTGGCATGTCGGATATGCCAGCGAGCCCAGCTTCTGTG 1122
Query 1222 GCGTCAAGCGGACACTTTCCATTTGCTGCTTCAGACATGTCAGGGATGGGAATGGACACG 1281
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1123 GCGTCAAGTGGACACTTTCCATTTGCTGCTTCAGACATGTCAGGGATGGGAATGGATACA 1182
Query 1282 TCAGCTCTTGACTCTGCTTTCACATCTGATGTCGG-AACTTCAGTAGGGTTACAACTTGG 1340
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1183 TCAGCTCTTGATTCTGCTTTCACATCTGATGT-GGCAACTTCAGTAGGGTTACAACTTGG 1241
Query 1341 ATCAGATGGAGGAGCTGGAAATTCTAGAGACCCTCTCAGGCCATTTGATCAGATACCTTG 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ATCAGATGGAGGAGCTGGAAATTCTAGAGACCCTCTCAGGCCATTTGATCAGATACCTTG 1301
Query 1401 GAACTTTAGTCTCTCTGACCTCACTGCAGATTTGTCAAATCTTGGAGATTTAGGGGCTTT 1460
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1302 GAACTTTAGCCTCTCTGACCTCACTGCAGATTTGTCAAATCTTGGAGATTTAGGGGCCTT 1361
Query 1461 AGGAAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCC 1520
|||||||||||||||||| |||||||| || || ||||||||||||||||| || |||||
Sbjct 1362 AGGAAACTATCCCGGTTCACCTTTTCTTCCTTCCGATTCAGAGATTTTACTCGATTCTCC 1421
Query 1521 CGAACAAGAGGACATAGATGAATTCTTTGTGGATTCGATTCCAGGACCTCCATGTTCTCA 1580
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1422 TGAACAAGAGGGCATAGATGAATTCTTTGTGGATTCGGTTCCAGGACCTCCATGTTCACA 1481
Query 1581 GTCAGAAGAAGACAAGTCTTAATCAAGCTTATGATATTTGATCAATAGAAACAGTCTTAT 1640
||||||||||||||||||||||||||| | | | | ||| | | || | | ||
Sbjct 1482 GTCAGAAGAAGACAAGTCTTAATCAAGAAT-TCA-A---GATTA-T-GATA---T-TTG- 1529
Query 1641 TATCTAGCAAGCAAGCATTGTTTGTGCCGTTTCTCTATATTAGAGAAAACCTCC 1694
|| |||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1530 -AT--AGCAAGCAAGCAAGGTTTGTGCCGTCTCGCTATATTAGAGAAAACCTCC 1580
Score = 117 bits (63), Expect = 3e-25
Identities = 103/120 (86%), Gaps = 12/120 (10%)
Strand=Plus/Plus
Query 1757 ATAGACTTAGATTAATTGCTCAGTTGTTTGTTTATTGTACACCTTTATTTTGGGACTT-T 1815
||||||||||||||||| || || || || ||||||||||||||||||||||||| || |
Sbjct 1607 ATAGACTTAGATTAATTTCTTAG-TG-TTCTTTATTGTACACCTTTATTTTGGGA-TTCT 1663
Query 1816 GCTAAGCATTG-----TA--TAA-TATCTCCCAATAATCTATTTTCTTGTTGGATAGTTC 1867
|| || ||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1664 GCAAATCATTGTATTATATCTAAGTATCTCCCAATAATCTATTTTCTTGTTGGATAGTTC 1723
Score = 93.5 bits (50), Expect = 5e-18
Identities = 60/65 (92%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 67 AGGACTTAAAAATTCCAAGCTCGCTTATGAGAGTAATGGCGTAGCAAAATCTTTATCTAA 126
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 49 AGGACTTGTAAATTCTAAGCTTGCTTATGAGAGTAATGGCGTAGCAAAATCTTTATCCAA 108
Query 127 CTCTT 131
|||||
Sbjct 109 CTCTT 113
Score = 63.9 bits (34), Expect = 4e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1 AGCGGACGTCTCCGTCTCTTCTTCTGCTTCTAAC 34
||||||||||||||||||||||||||||||||||
Sbjct 1 AGCGGACGTCTCCGTCTCTTCTTCTGCTTCTAAC 34
> Ahg486659 jgi|Araly1|486659|fgenesh2_kg.5__2651__AT3G61700.2
Length=1779
Score = 913 bits (494), Expect = 0.0
Identities = 910/1102 (83%), Gaps = 63/1102 (6%)
Strand=Plus/Plus
Query 522 ACAGGAGTTGCAGTCTTCTACCCAAGTTTCACATGAGTCCCAAGGTGAACAGAAAGTTAA 581
|||||| | || ||||| || |||| ||||||||| || ||||||||||||||| ||
Sbjct 508 ACAGGAACTACATTCTTCCACTCAAGCTTCACATGACTCTCAAGGTGAACAGAAAACCAA 567
Query 582 TTTATCAGTAGAAGCTCCAATACAAGATTCTGGTTCTGTATCTGCCTCAAGTAATGACGG 641
||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||| |
Sbjct 568 CCTATCAATAGAGGCTCCTATACAAGATTCTGGTTCTGTATCTGCTTCAAGCAATGACAG 627
Query 642 TAGGAAAGTGTCAAGACAAGATATTGAACTTGTCCAAAATTTGATAGAAAGATGTCTCCA 701
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 628 TAGGAAAGTTTCAAGACAAGATATTGAACTTGTTCAAAATTTGATAGAAAGATGTCTTCA 687
Query 702 GTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCC 761
||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 688 GTTGTACATGAACAGAGATGAGGTCGTGAAGACCCTCTTGACTCGTGCAAGGATAGACCC 747
Query 762 TGGTTTTACAACATTAGTATGGCAAAAACTGGAAGAAGAAAACGCAGAGTTTTTCAGGGC 821
||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 748 TGGATTTACAACCTTGGTTTGGCAGAAATTGGAAGAAGAAAACGCAGACTTTTTCAGGGC 807
Query 822 ATATTACATCAGACTGAAACTGAAGAAGCAAATAGTTGTATTCAATCATTTGCTTGAGCA 881
||||| || || |||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 808 TTATTATATAAGGTTGAAACTGAAGAAGCAAATAATTTTGTTCAATCATTTGCTTGAGCA 867
Query 882 TCAGTATCACCTCACGAAGTATAATG-T--ACATTCAAAAGTTCCTCTGGTC-CCAATGC 937
||||| || |||| ||||||| | | || | ||||| ||||||||| | || || |
Sbjct 868 CCAGTACCATCTCATGAAGTATCCTCCTGGACCTCCAAAAATTCCTCTGG-CACCGATAC 926
Query 938 AGAACGGTATTCATCCTATGGCATCTGTGAACAACATGCCCATGGGATACCCAGTACTAC 997
| ||||| || ||||| |||||| |||| |||| |||| |||||||||||||||||||
Sbjct 927 AAAACGGAATGCATCCCATGGCACCTGTTAACA---TGCCAATGGGATACCCAGTACTAC 983
Query 998 AACATCCTCAGATGCATGCTCAAGGTCATCCCCATCTTGATCCTATGAGCTGTGGAATGT 1057
|||||||||| ||||||| || ||| ||||||||||||||| | | | || ||| | |
Sbjct 984 AACATCCTCAAATGCATGTTCCAGGCCATCCCCATCTTGATGC-A--A--TG-GGAGTAT 1037
Query 1058 CAAGCTGCCATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTCCAACCAATGAGGATCA 1117
| ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||| |
Sbjct 1038 CGAGCTGCCATGTTGTTAATGGAGTCCCTGCCCCTGCGAATTTCCATCCTTTGAGGATGA 1097
Query 1118 ACT-CAGGGAATGATATGGTAATAGATACAAC--C-A-TGGCTG-AAC-CAACTCCAA-T 1169
| | ||| |||||||||||| || |||||||| | | ||| || ||| | ||| || |
Sbjct 1098 A-TACAGCGAATGATATGGTGATCGATACAACTGCGAATGG-TGCAACTC--CTC-AAGT 1152
Query 1170 GATTCCACCAAATAGTGGT---ATGTCGGATATGCCAGTAAGTCCAGCTTCTGTGGCGTC 1226
|||||||||||| ||||| ||| | || ||| ||| || |||||||||||||||||
Sbjct 1153 GATTCCACCAAACAGTGGGGGGATGCCTGAGATGGCAGCGAGCCCAGCTTCTGTGGCGTC 1212
Query 1227 AAGCGGACACTTTCCATTTGCTGCTTCAGACATGTCAGGG-ATGGGAATGGACACGTCAG 1285
||| ||||||||||| |||||||||||||||||||| ||| |||| ||||||||| ||||
Sbjct 1213 AAGTGGACACTTTCCGTTTGCTGCTTCAGACATGTC-GGGTATGGTAATGGACACTTCAG 1271
Query 1286 CT-CTTGACTCTGCTTTCACATCTGATGTCGGAACTTCAGTAGGGTTACAACTTGGATCA 1344
| ||||| || || ||||||||||| || ||| | | | | | | |||
Sbjct 1272 -TGCTTGATTCAGCATTCACATCTGACGTTGGA-C--C-G--G----A----T-GGA--- 1312
Query 1345 GATGGAGGAGCTGGAAATTCTAGAGAC-CCTCTCAGGCCATTTGATCAGATACCTTGGAA 1403
|| |||||| || ||||| ||||| || |||||| ||||||||||||| ||||||||
Sbjct 1313 GA---AGGAGCCGGGAATTCCAGAGATTCC-CTCAGGTCATTTGATCAGATTCCTTGGAA 1368
Query 1404 CTTTAGTCTCTCTGACCTCACTGCAGATTTGTCAAATCTTGGAGATTTAGGGGCTTTAGG 1463
|||||| || ||||| ||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 1369 CTTTAGCCTTTCTGATCTCACGGCAGATTTGTCAAATCTGGGAGATTTAGGAGCCTTAGG 1428
Query 1464 AAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCCCGA 1523
||||||||| || ||||| ||||| |||||||||||||||||||| || || ||||| ||
Sbjct 1429 AAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGA 1488
Query 1524 ACAAGAGGACATAGATGAATTCTTT-GTGGATTCGATTCCAGGACCTCCATGTTCTCAGT 1582
||||||||||||||| || || ||| ||||||||| | || ||||||| ||||| | |
Sbjct 1489 ACAAGAGGACATAGAGGAGTT-TTTCGTGGATTCGGTGCCTGGACCTC---GTTCTAATT 1544
Query 1583 CAGAAGAAGACAAGTCTT-AAT 1603
|||| ||||| ||| ||| |||
Sbjct 1545 CAGATGAAGAGAAGCCTTGAAT 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70162231290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5