BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46550.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483815 jgi|Araly1|483815|fgenesh2_kg.4__2875__AT2G46550.1 1932 0.0
> Ahg483815 jgi|Araly1|483815|fgenesh2_kg.4__2875__AT2G46550.1
Length=1559
Score = 1932 bits (1046), Expect = 0.0
Identities = 1355/1495 (91%), Gaps = 58/1495 (4%)
Strand=Plus/Plus
Query 1 AAGAAAACGATAATAAACTGCaaaatgattcaaaagattttaatcgaaagcaaacaaaaa 60
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1 AAGAAAACGATAATAAACTGCAAAA-GATTCAAAAGCTTTTAATCGAAAGCAAACAAAAA 59
Query 61 ttctctgacaatcagaaaacaaaaaaaaaTCAGAACAACTCTTATCTTCTTCACGAGACT 120
||||||||||| | |||| ||||| || ||||||||||||||||| | || ||
Sbjct 60 TTCTCTGACAA--ACAAAA-AAAAACAATTCAGAACAACTCTTATC-T-TT-------CT 107
Query 121 GACTAAACAATCATAGATTTTTCCGTTTTTTGGGTTTCGTCTGGTGTTACTCTCTCCTTC 180
| | | |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 108 ---T---C-A-CATAGATTTTTCCGTTTTGTGTGTTTCGTCTGGTGTTACTCTCTCCTTC 159
Query 181 TGAGTTATGGTGAAATAATGGCAGCAGCTGAAGCAAGAGCAGTGTGGCAAAGAACAGTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 160 TGAGTTATGGTGAAATAATGGCAGCAGCTGAAGCAAGAGCAGTGTGGCAAAGAACTGTTA 219
Query 241 ATCGTTGCTTTGTCCAAGAAGACGCTAAAAGAGCTCCCAAGTTAACTTATTGCCAA---T 297
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 220 ACCGTTGCTTTGTCCAAGAAGACGCTAAAAGAGCTCCCAAGTTAACCTATTGCCAATCTT 279
Query 298 CATCTTCATCCTCAACTGCTTCTTCAACTAAGCAAGTGGAAGTTTCTGGTTCTTCTCCTC 357
|||| || ||||||||| || |||||||||||||||| |||| ||||||||| |||||||
Sbjct 280 CATCCTCCTCCTCAACTACTCCTTCAACTAAGCAAGTTGAAGATTCTGGTTCGTCTCCTC 339
Query 358 GAGTTTCTGTTGAACCACGGACTCAATCATCTTGTGCAGGTTTCATGCCTCTTCCTCGAA 417
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 340 GAGTTTCTGTTGATCCACGGAAGCAATCATCTTGTGCAGGTTTCATGCCTCTTCATCGAA 399
Query 418 ACCCGAATTTCCCTGATCTGTTACCCCACAACACCAGACTGTGGAGTCATCCTCATCATC 477
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 400 ACCCGAATTTCCCTGATCTGTTACCCCACAACACCAGATTGTGGAGTCATCATCATCATC 459
Query 478 AGTTTCAGGTGAATAAGAAGCAGCCATTGGAGGATGAGGTTAACAATCAAGGTGTATCTG 537
| ||||||||| ||||| | ||| ||||||| ||||||||||||||||||||||||||
Sbjct 460 ACTTTCAGGTGTATAAG-A--TGCCTTTGGAGGCTGAGGTTAACAATCAAGGTGTATCTG 516
Query 538 AGAAGAAGTCTGAATTGGGAGCTGGAGAGAAACAAGGAAAGTCTTTTAATTCCGAAAGCT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AGAAGAAGTCTGAATTGGGAGCTGGAGAGAAACAAGGAAAGTCTTTTAATTCCGAAAGCT 576
Query 598 TTCAAGAGTTTATAGAGTTGATGGAGACAAGGGAGAGTTATGGTTCAACTGGGTATGATG 657
|||||||||||||||||||| ||| |||||||| | | | | |||||||
Sbjct 577 TTCAAGAGTTTATAGAGTTGGGGGAAACAAGGGA-A---A--G------T---TATGATG 621
Query 658 AGTCCTCTGAGAAAAAGTTAAGTGAGCTCTCTTTTGATCCTAGCTCGCCGTGGAATCTTC 717
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct 622 AGTCCTCTGAGAAAAAGTTAAGTGAGCTCCCTTTTGATCCCAGCTCGCCGTGGAATCCTC 681
Query 718 TCTCGAGTGAGAAAGCTGCACCGTGGTGGCGAACTACGGATAAAGACGAGTTAGCTTCCT 777
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 682 TCTCGAGCGAGAAAGCTGGGCCGTGGTGGCGAACTACGGATAAAGACGAGTTAGCCTCCT 741
Query 778 TGGTTGCACAAAGATCTCTAGACTATGTTGAGAATTGTGATTTACCAACACCGCAGAAGA 837
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 742 TGGTTGCACAAAGATCTCTAGACTATGTTGAGAATTGTGATTTACCAACACCACAGAAGA 801
Query 838 TGAAACGATCTTATTATGGTAGTCCACGTGGTTTTGATTCTGATGGATTGAGAGACTACT 897
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 802 TGAAACGATCTTATTATGGTAGTCCGCGTGGTTTTGATTCTGATGGATTCAGAGACTACT 861
Query 898 CTGTCTCTGGCCAAACCAT---C-A--A-GGGTACAAGCAAAGGAAGCAGCTGCAAGAAC 950
||||||||||||||||||| | | | ||| | |||| |||||||||||||||||||
Sbjct 862 CTGTCTCTGGCCAAACCATCCCCGAGCACGGG-CCGAGCAGAGGAAGCAGCTGCAAGAAC 920
Query 951 AGACCCGAGGCTTCATCTGAGTCTGATTTAAGCAAATCCGAGCTTCTAGAAGCACTGAGG 1010
||| |||||||||| |||||| |||||||||||||| ||||||| |||||||| ||||||
Sbjct 921 AGAACCGAGGCTTCGTCTGAGCCTGATTTAAGCAAAACCGAGCTACTAGAAGCGCTGAGG 980
Query 1011 CGTTCGCAAACGCGGGCTAGGGAAGCGGAGAATATGGCTAAAGAAGCTTATGCAGAGAAA 1070
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 981 CATTCCCAAACGCGGGCTAGGGAAGCGGAGAACATGGCTAAAGAAGCTTATGCAGAGAAA 1040
Query 1071 GAGCACTTGGTGAAGATATTGTTGAAGCAAGCCGCAGAGCTTTTTGGGTATAAGCAATGG 1130
||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 1041 GAGCACTTGGTGAAGATCTTGTTCAAGCAAGCCTCAGAGCTTTTCGGGTATAAGCAATGG 1100
Query 1131 TTACAACTGCTTCAGCTAGAAGCACTTTACCTCCAAATCAAGAACAAGGAGATTGACAAT 1190
||||| ||||||||||| |||||||||||||||||||||||||| ||| ||| ||| ||
Sbjct 1101 TTACAGCTGCTTCAGCTCGAAGCACTTTACCTCCAAATCAAGAAAAAGAAGAATGAGAAC 1160
Query 1191 AAGAACAACGACGATCCAGGGGTTTCCATCCCTTGTTGGAGCAATGGCAAAGCAAGAAAA 1250
||| ||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1161 AAGGACAGCAACGAGCCAGCGGTTTCCATCCCTTGTTGGAGCAATGGGAAAGCAAGAAAA 1220
Query 1251 GAGGGGAGAAAGAGAAGAAGCAAAAGGGGTAAACCGAATGGAGCAAAGTACGCGGTTGGT 1310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CAGGGGAGAAAGAGAAGAAGCAAAAGGGGTAAACCGAATGGAGCAAAGTACGCGGTTGGT 1280
Query 1311 TTAGCATTGGGGATGAGTCTTGTTGGTGCTGGTTTGCTTCTTGGATGGACTGTTGGATGG 1370
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1281 TTAGCTTTGGGGATGAGTCTTGTTGGTGCTGGTTTGCTTCTTGGATGGACTGTCGGATGG 1340
Query 1371 ATGCAGATGCTATCGTTCTAGTTTAAAGAGAA-GA-AAAGAGACA-AAACTTCA-TCTTT 1426
|||||||||||||| || |||| ||||||||| || ||||||| | ||| | | || ||
Sbjct 1341 ATGCAGATGCTATCCTTGTAGTCTAAAGAGAAAGATAAAGAGA-AGAAA-TG-AGTCGTT 1397
Query 1427 TTTCTCATTGAACAGCTTGATGATGTTGAAATGAGTTAAAAGATTGGCTTCGAAT 1481
|| |||| ||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 1398 TT-CTCAAGGAACAGCTTGATGATCTTGAAATGAGTTTAAAGATTTGCTTCGAAT 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5