BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46600.1

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935642 jgi|Araly1|935642|scaffold_403630.1                        850    0.0  


> Ahg935642 jgi|Araly1|935642|scaffold_403630.1
Length=529

 Score =  850 bits (460),  Expect = 0.0
 Identities = 506/528 (96%), Gaps = 4/528 (1%)
 Strand=Plus/Plus

Query  7    AGAGTTCACCAAAATCTCTTCTCTCTCTTCCATTGTCTTCCTCTAATGGAACCAACCGAG  66
            ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct  1    AGAGTTCACCAAAATCTATTCTCTCTCTTCTATTATCTTCCTCTAATGGAACCAACCGAG  60

Query  67   AAATCTATGTTACTAGAAACTACTAGTACCACGAAGATGGAGACCAAATACGAAGATATG  126
            ||||| ||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct  61   AAATCCATGATACTAGAAACTACCACTACGACGAAGATGGAGACCAAATACGAAGATATG  120

Query  127  TTACCAGTTATGGCGGAGAAGATGGATGTTGAAGAGTTTGTATCAGAGTTATGCAAAGGT  186
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTGCCAGTTATGGCGGAGAAGATGGATGTTGAAGAGTTTGTATCAGAGTTATGCAAAGGT  180

Query  187  TTCAGTTTGCTTGCGGATCCAGAGAGACATCTCATCACAGCTGAGTCTCTAAGACGAAAC  246
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  181  TTCAGTTTGCTTGCGGATCCAGAGAGAGATCTCATCACAGCTGAGTCTCTAAGACGAAAC  240

Query  247  TCAGGGATACTTGGAATTGAAGGTATGAGCAAGGAAGATGCTCAAGGAATGGTTAGAGAA  306
            || ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCTGGGATACTTGGGATTCAAGGTATGAGCAAGGAAGATGCTCAAGGAATGGTTAGAGAA  300

Query  307  GGAGACCTCGATGGAGATGGTGCTCTTAACCAAACCGAATTCTGCGTTCTCATGGTTCGG  366
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGAGACCTTGATGGAGATGGTGCTCTTAACCAAACCGAATTCTGCGTTCTCATGGTTCGG  360

Query  367  TTAAGCCCTGAGATGATGGAAGACGCCGAAACTTGGTTGGAGAAAGCACTCACCCAAGAA  426
            |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  361  TTAAGCCCCGAGATGATGGAAGATGCGGAAACTTGGTTGGAGAAAGCACTCACCCAAGAA  420

Query  427  CTATGTAATCACAATCTCTCTTCTATGCCTTGAATGATCGTCCTCCTTTCTTGTGTATTC  486
            ||||||||||||||||||||||||||||||||| | |||  || ||||||||||||||||
Sbjct  421  CTATGTAATCACAATCTCTCTTCTATGCCTTGA-TCATC--CC-CCTTTCTTGTGTATTC  476

Query  487  TCTTTTTACTTCTACAAAACCTATAAATGTTTCTGAATATAAAATGAA  534
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  477  TCTTTTTACTTCTACAAAACCTATAAATGTTTCTGAATATAAAATGAA  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21290818662


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5