BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46600.1 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg935642 jgi|Araly1|935642|scaffold_403630.1 850 0.0 > Ahg935642 jgi|Araly1|935642|scaffold_403630.1 Length=529 Score = 850 bits (460), Expect = 0.0 Identities = 506/528 (96%), Gaps = 4/528 (1%) Strand=Plus/Plus Query 7 AGAGTTCACCAAAATCTCTTCTCTCTCTTCCATTGTCTTCCTCTAATGGAACCAACCGAG 66 ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1 AGAGTTCACCAAAATCTATTCTCTCTCTTCTATTATCTTCCTCTAATGGAACCAACCGAG 60 Query 67 AAATCTATGTTACTAGAAACTACTAGTACCACGAAGATGGAGACCAAATACGAAGATATG 126 ||||| ||| ||||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 61 AAATCCATGATACTAGAAACTACCACTACGACGAAGATGGAGACCAAATACGAAGATATG 120 Query 127 TTACCAGTTATGGCGGAGAAGATGGATGTTGAAGAGTTTGTATCAGAGTTATGCAAAGGT 186 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTGCCAGTTATGGCGGAGAAGATGGATGTTGAAGAGTTTGTATCAGAGTTATGCAAAGGT 180 Query 187 TTCAGTTTGCTTGCGGATCCAGAGAGACATCTCATCACAGCTGAGTCTCTAAGACGAAAC 246 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 181 TTCAGTTTGCTTGCGGATCCAGAGAGAGATCTCATCACAGCTGAGTCTCTAAGACGAAAC 240 Query 247 TCAGGGATACTTGGAATTGAAGGTATGAGCAAGGAAGATGCTCAAGGAATGGTTAGAGAA 306 || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTGGGATACTTGGGATTCAAGGTATGAGCAAGGAAGATGCTCAAGGAATGGTTAGAGAA 300 Query 307 GGAGACCTCGATGGAGATGGTGCTCTTAACCAAACCGAATTCTGCGTTCTCATGGTTCGG 366 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGAGACCTTGATGGAGATGGTGCTCTTAACCAAACCGAATTCTGCGTTCTCATGGTTCGG 360 Query 367 TTAAGCCCTGAGATGATGGAAGACGCCGAAACTTGGTTGGAGAAAGCACTCACCCAAGAA 426 |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 361 TTAAGCCCCGAGATGATGGAAGATGCGGAAACTTGGTTGGAGAAAGCACTCACCCAAGAA 420 Query 427 CTATGTAATCACAATCTCTCTTCTATGCCTTGAATGATCGTCCTCCTTTCTTGTGTATTC 486 ||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||| Sbjct 421 CTATGTAATCACAATCTCTCTTCTATGCCTTGA-TCATC--CC-CCTTTCTTGTGTATTC 476 Query 487 TCTTTTTACTTCTACAAAACCTATAAATGTTTCTGAATATAAAATGAA 534 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TCTTTTTACTTCTACAAAACCTATAAATGTTTCTGAATATAAAATGAA 524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5