BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46690.1 Length=738 Score E Sequences producing significant alignments: (Bits) Value Ahg935653 jgi|Araly1|935653|scaffold_403641.1 815 0.0 Ahg324630 jgi|Araly1|324630|fgenesh1_pm.C_scaffold_5002174 230 1e-59 > Ahg935653 jgi|Araly1|935653|scaffold_403641.1 Length=489 Score = 815 bits (441), Expect = 0.0 Identities = 478/495 (97%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 154 taaaaacgttttcaaaaaaTCATGGGCACCGGAGAAAAAACCCTGAAGAGCTTCCAGTTA 213 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 TAAAAACGTTTTC-AAAAATCATGGGCACCGGAGAAAAACCCCTGAAGAGCTTCCAGTTA 59 Query 214 CATCGCAAACAATCAGTCAAAGTCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTG 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CATCGCAAACAATCAGTCAAAGTCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTG 119 Query 274 GGATCGCAAGGAGAAGAGCAACAGAGATTTATCGTTCCTGTTTTGTATTTTAACCATCCA 333 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 120 GGATCACAAGGAGAAGAGCAACAGAGATTTATTGTTCCTGTTTTGTATTTTAACCATCCA 179 Query 334 TTGTTCATGCAGCTCCTGAAAGAAGCAGAAGACGAGTATGGATTCGATCAAAAGGGCACC 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTGTTCATGCAGCTCCTGAAAGAAGCAGAAGACGAGTATGGATTCGATCAAAAGGGCACC 239 Query 394 ATCACAATTCCTTGTCACGTGGAGGAGTTTCGTTACGTTCAAGCTTTGATAGATGGAGAG 453 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 240 ATCACAATTCCTTGTCACGTGGAGGAGTTTCGTTACGTTCAAGCTTTGATTGATGGAGAG 299 Query 454 AGATCAGTTTACAATGGTAACAACCATCATCATAGACATGGTGGCCGTGACCAGTATCAT 513 ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 AGATCGGTTTATAATGGTAACAACAATCATCATAGACATGGTGGCCGTGACCAGTATCAT 359 Query 514 CATCTTGTTGGATGCTTCAGAGCTTGATGAATAATGATGAAATGAAATGATGGGTGGTGA 573 |||||||||||||||||||||||||||||||| ||||||||| | ||||| || |||| Sbjct 360 CATCTTGTTGGATGCTTCAGAGCTTGATGAATGATGATGAAA--A--TGATGAGTAGTGA 415 Query 574 TTGTATGTGTTCAAATTTTAATGTTTTTTCTGGTTTAATCTTGTGGAGTTGTGGAGCCAA 633 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 416 TTGTATGTGTTCAAATTTTAATGTTTTTA-TGGTTTAATCTTGTGGAGTTGTGGAGCCAA 474 Query 634 AACTGGCCTAACCCA 648 ||||||||||||||| Sbjct 475 AACTGGCCTAACCCA 489 > Ahg324630 jgi|Araly1|324630|fgenesh1_pm.C_scaffold_5002174 Length=420 Score = 230 bits (124), Expect = 1e-59 Identities = 194/227 (85%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 236 TCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTGGGATCGCAAGGAGAAGAGCAAC 295 |||||||||||||||||||||||||||| |||||||||||||| ||| ||| ||| ||| Sbjct 80 TCAAAGATGTTCCAAAAGGGTGTTTAGCAATCAAAGTGGGATCAAAAGAAGAGGAGAAAC 139 Query 296 AGAGATTTATCGTTCCTGTTTTGTATTTTAACCATCCATTGTTCATGCAGCTCCTGAAAG 355 |||||||| | ||||||||||| |||||||||||||||||||||||||| ||| | || | Sbjct 140 AGAGATTTGTTGTTCCTGTTTTTTATTTTAACCATCCATTGTTCATGCAACTCTT-AAGG 198 Query 356 -AAGCAGAAGACGAGTATGGATTCGATCA-AAAGGGCACCATCACAATTCCTTGTCACGT 413 ||||||| || |||||||||||||| || ||||| ||||||||||| ||||| ||||| Sbjct 199 GAAGCAGAGGAAGAGTATGGATTCGAGCAGAAAGGT-ACCATCACAATCCCTTGCCACGT 257 Query 414 GGAGGAGTTTCGTTACGTTCAAG-CTTTGAT-AGATGGAGAGAGATC 458 ||| | ||||| |||||||||| | | ||| | | |||||||||| Sbjct 258 GGATGTTTTTCGATACGTTCAAGACAT-GATCA-ACAGAGAGAGATC 302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27181639821 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5