BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46710.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483835 jgi|Araly1|483835|fgenesh2_kg.4__2895__AT2G46710.1 2486 0.0
> Ahg483835 jgi|Araly1|483835|fgenesh2_kg.4__2895__AT2G46710.1
Length=1561
Score = 2486 bits (1346), Expect = 0.0
Identities = 1492/1563 (95%), Gaps = 7/1563 (0%)
Strand=Plus/Plus
Query 166 AAACGATGACTAACTTCTCCCGATCCAAATCCACCGGAACTATCGGGTTCCCGGAGTTTA 225
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAACGATGACTAACTTCTCCCGATCCAAATCCACCGGAACTATCGGTTTCCCGGAGTTTA 60
Query 226 AACCCACTCGACCCGGTCCAGACAAATACGAGAACATCCACAACGATGACGACGAGTACG 285
|||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 61 AACCGACTCGACCCGGTCCAGACATATACGAGAACGGCCACAACGATGACGACGAGTACG 120
Query 286 AAGAAGGACATAGCACTACGAGTACAGACTACTACGACGCTTCAACGCCGTTGAGCTCAC 345
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGAAGGACATAGCACTACGAGCACAGACTACTACGACGCTTCAACGCCGTTGAGCTCAC 180
Query 346 ACGCGTCAAGATCCGGGAACGGGTCCGGCTCGGGTCAGTTAACGGTCGTAGACCTTCTTG 405
||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 181 ACGCGTCAAGATCAGGGAACGGGTCCGGGTCGGGTCAGTTAACGATCGTAGACCTTCTTG 240
Query 406 CGGCGGTTCTGAGGAAGTCGTTGGTGATGTCGTGTGCGATGGAGAGAGGGGAAGATGACG 465
|||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct 241 CGGCGGTTCTGAGGAAGTCGCTGGTGATGTCGTGTGCCATGGAGAGAGGGGACGATGACG 300
Query 466 TGGTGGCGTCTATGGATATAGGTTGGCCGACGGAGGTTAAGCACGTGAGTCACGTGACTT 525
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGCGGCGTCTATGGATATAGGTTGGCCGACGGAGGTTAAGCACGTGAGTCACGTGACTT 360
Query 526 TTGATCGGTTCAATGGTTTTCTTGGTCTTCCTTCTGAGCTCGAACCGGAGGTTCCTCCTC 585
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TTGACCGGTTTAATGGTTTTCTTGGTCTTCCGTCTGAGCTCGAACCGGAGGTTCCTCCTC 420
Query 586 GAGCTCCTAGCGCCAGTGTAAGTGTATTTGGAGTATCGGCGAAGTCAATGCAATGCTCTT 645
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GAGCTCCTAGCGCCAGTGTAAGTGTATTTGGAGTATCGGCAAAGTCAATGCAATGCTCTT 480
Query 646 ACGACGACAGAGGAAATAGTGTCCCAACAATCCTTCTCAGGATGCAAAAACGTCTATACA 705
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGACGACAGAGGAAATAGTGTCCCAACAATCCTTCTCAGGATGCAAAAACGTCTATACA 540
Query 706 CTGAAGGAGGTCTTAAAGCAGAAGGAATTTTCCGAATAAATCCAGACAACGGCAAAGAAG 765
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 CCGAAGGAGGTCTTAAAGCAGAAGGAATATTCCGAATAAATCCAGACAACGGCAAAGAAG 600
Query 766 AGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATTGCT 825
|||||||||| |||||| | ||| | ||||||||||||||||||||||| ||||||||||
Sbjct 601 AGCATGTCCGAAGACAGCTAAACCGCGGTGTGGTACCACGTGGAATTGACGTTCATTGCT 660
Query 826 TGGCGGGTTTAATAAAGGCGTGGTTCAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGA 885
|||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 TGGCAGGATTAATAAAGGCATGGTTTAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGA 720
Query 886 CACCAGAGCAAGTAATGAGGTGTAACACGGAGGAGGATTGTAGCCGGCTAGTGATACTTC 945
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 721 CACCAGAGCAAGTGATGAGGTGTAACACAGAGGAGGATTGTAGCCGGCTAGTGACACTTC 780
Query 946 TTCCTCCGGTTGAATCTGCGATTCTTGATTGGGCCATCGGTCTAATGGCGGATGTGGTGG 1005
||||||| |||||||||||| |||| || |||||||| ||||||||||||||||||||||
Sbjct 781 TTCCTCCCGTTGAATCTGCGCTTCTCGACTGGGCCATTGGTCTAATGGCGGATGTGGTGG 840
Query 1006 AGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATA 1065
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 841 AGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCCCCAAACA 900
Query 1066 TGACTCAAATGGCAGATCCTTTAACTGCACTCATCCACGCAGTGCAAGTGATGAACTTTC 1125
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 901 TGACTCAAATGGCAGATCCTTTAACTGCACTAATCCACGCGGTGCAAGTGATGAACTTTC 960
Query 1126 TCAAGACTTTGATCTTAATGAACCTCAAAGAAAGGGAAAACGCAGACGCGAAAGCAAGGT 1185
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 961 TCAAGACTTTGATCTTAATGAACCTCAAAGAGAGGGACAACGCAGACGCGAAAGCAAGGT 1020
Query 1186 GGCTCAAGAAACAAACATCTGATCCATCAGAAGAATGGGAATCACAACACTCCGAGATAT 1245
||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1021 GGCTCGAGAAACAAACATCTAATCCATCAGAAGAATGGGAATCACAACACTCTGAGATAT 1080
Query 1246 TAAGCCCTGAGAAACCAAACAATAATAACCCTAAGTTCTTGAGAGTGGCTACTCTGTGTA 1305
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1081 TAAGCCCTGAGAAACCCAACAATAATAACCCTAAGTTTTTGAGAGTGGCTACTCTGTGTA 1140
Query 1306 GGCTAGAGGCTGACAATGAAGAAGAGTTTTGGAATATAAAGAAGAGAAACGATCATGAAG 1365
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1141 GGCTAGAGGCTGACAATGAAGAAAAGTTTTGGAACATAAAGAAGAGAAACGATCATGAAG 1200
Query 1366 GTGTTTTAGATACTTCATCGGGTAATGGAAATATTGGACCGGTACAAAGGTTGTGTAAGC 1425
||||||| |||||||||||||||||| ||| || ||||||||||||||||| |||||||
Sbjct 1201 CTGTTTTAAATACTTCATCGGGTAATGAAAACATCGGACCGGTACAAAGGTTATGTAAGC 1260
Query 1426 ATCCATTGTTTCAGTTAAGCAAATCCACCAAGAAAGCTTTTGTAAGTAATCGAGATGAAG 1485
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1261 ATCCACTGTTTCAGTTAAGCAAATCCACAAAGAAAGCTTTTGTAAGTAATCGAGATGAAG 1320
Query 1486 GAAGAAAAGGACGAGAAGCTTGGAGTTCACGTCTCTCTTCTTTGCCTTGGTAAAATTTTC 1545
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GAAGGAAAGGACGAGAAGCTTGGAGTTCACGTCTCTCTTCTTTGCCTTGGTAAAATTTTC 1380
Query 1546 TTACCTCACTTTATTTTTCATGTTTTTGAGAGTGTAAAAAATATTGTGAAATATGATTAT 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTACCTCACTTTATTTTTCATGTTTTTGAGAGTGTAAAAAATATTGTGAAATATGATTAT 1440
Query 1606 AGGTGTTAGTTGTTTGAAAATAGGGATAAATTTACATCCAATCAATTCAGAAATGGAAAC 1665
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1441 AGGTGTTAGTTGTTTGAAA-TAGGGATAAATTTATATCCAATCAATTCAGAAATGGAAAC 1499
Query 1666 AAATGTATCCTAGTTACTT-TCTGAGAGAAAACTCAT--A--CTCTATTCACAAAAACAG 1720
|||||||| |||||| ||| ||| ||||||||||||| | ||||||||||||||||||
Sbjct 1500 AAATGTATGCTAGTT-CTTGTCTAAGAGAAAACTCATGTATACTCTATTCACAAAAACAG 1558
Query 1721 AGC 1723
|||
Sbjct 1559 AGC 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5