BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46790.1
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483843 jgi|Araly1|483843|fgenesh2_kg.4__2903__AT2G46790.1 2383 0.0
> Ahg483843 jgi|Araly1|483843|fgenesh2_kg.4__2903__AT2G46790.1
Length=1713
Score = 2383 bits (1290), Expect = 0.0
Identities = 1532/1643 (93%), Gaps = 39/1643 (2%)
Strand=Plus/Plus
Query 195 tgtgattcagtttgttttgAGGTCTGAGTCTATGGGGGAGATTGTGGTTTTAAGTAGTGA 254
||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 82 TGTGATTTTGTTTGTTTTGAGCTCTGAATCTATGGGGGAGATTGTGGTATTAAGTAGTGA 141
Query 255 TGATGGTATGGAGACTATAAAGAACAGAGTAAAGTCATCGGAAGTTGTTCAGTGGGAGAA 314
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TGATGGTATGGAGACGATAAAGAACAGAGTAAAGTCATCGGAAGTTGTTCAGTGGGAGAA 201
Query 315 GTATTTGCCTAAAACTGTACTTAGGGTTTTGTTAGTTGAATCTGATTACTCAACTCGTCA 374
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 202 GTATTTGCCTAAAACTGTGCTTAGGGTTTTGTTGGTTGAATCTGATTACTCAACTCGTCA 261
Query 375 AATCATCACTGCCCTTCTTCGTAAATGCTGTTACAAAGTTGTAGCTGTTTCTGATGGTTT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 AATCATCACTGCCCTTCTTCGTAAATGCTGTTACAAAGTTGTAGCTGTTTCTGATGGTTT 321
Query 435 AGCTGCGTGGGAGGTTCTAAAGGAGAAGTCACATAACATTGATCTTATACTAACAGAGCT 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 322 AGCTGCGTGGGAGGTTCTAAAGGAGAAGTCACATAACATTGATCTTATACTAACTGAGCT 381
Query 495 GGATTTGCCATCTATATCTGGTTTTGCTCTGCTTGCTTTGGTAATGGAGCATGAAGCTTG 554
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 382 GGATTTGCCATCTATATCTGGTTTTGCTCTGCTTGCTTTGGTTATGGAGCATGAAGCTTG 441
Query 555 CAAGAACATTCCTGTCATAATGATGTCTTCTCAAGATTCGATAAAAATGGTGTTGAAGTG 614
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 442 CAAGAACATTCCTGTCATAATGATGTCTTCGCAAGATTCGATAAAAATGGTGTTGAAGTG 501
Query 615 TATGCTGAGAGGTGCTGCTGATTATCTAATCAAACCAATGAGGAAAAACGAGTTGAAAAA 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TATGCTGAGAGGTGCTGCTGATTATCTAATCAAACCAATGAGGAAAAACGAGTTGAAAAA 561
Query 675 TCTATGGCAACATGTTTGGAGAAGACTGACTTTGCGTGATGATCCTACTGCTCATGCTCA 734
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 562 TCTATGGCAACATGTGTGGAGAAGACTTACTTTGCGTGATGATCCTACTGCTCATGCTCA 621
Query 735 AAGCTTACCAGCTTCACAGCACAACCTTGAAGATACTGATGAAACTTGTGAAGATTCCAG 794
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 AAGCTTACCAGGTTCACAGCACAACCTTGAAGATACTGATGAAACTTGTGAAGATTCCAG 681
Query 795 ATATCATTCAGATCAAGGAAGTGGTGCTCAGGCTATCAATTACAATGGTCACAATAAGCT 854
||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 682 ATACCATTCTGATCAAGGAAGTGGTGCTCAGGCTATCAGCTACAATGGTCACAATAAGCT 741
Query 855 GATGGAGAATGGCAAATCAGTGGATGAAAGAGACGAGTTTAAGGAAACTTTTGATGTGAC 914
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 742 AATGGAGAATGCCAAATCAGTGGATGAAAGAGACGAGTTTAAGGATTCTTTTGATGTGAC 801
Query 915 AATGGATTTGATTGGTGGAATTGACAAGCGTCCTGATAGTATTTATAAAGACAAGAGTCG 974
|||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||
Sbjct 802 AATGGATTTGATTGGTGGAATTGACAAGCGTCCTGATAGTCTTTATGGAGACGACAGTCG 861
Query 975 AGATGAGTGTGTTGGTCCTGAGCTTGGACTTTCTCTGAAAAGATCTTGCTCTGTAAGTTT 1034
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TGACGAGTGTGTTGGTCCTGAGCTTGGACTTTCTCTGAAAAGATCTTGCTCTGTAAGTTT 921
Query 1035 TGAGAACCAAGATGAAAGCAAGCATCAAAAGCTTAGCCTCTCTGATGCGTCGGCCTTCTC 1094
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 922 TGAGAACCAAGATGAAAGCAAGCATCAAAAGCTTAGCCTCTCTGATGCATCAGCCTTCTC 981
Query 1095 AAGATTTGAGGAA-AGCAAGTCAGCAGAAAAAGCCGTCGTTGCTTTAGAGGAGAGTACTT 1153
|||||||||| || || ||| ||||||| ||||| |||||||||||||||||||||| ||
Sbjct 982 AAGATTTGAG-AATAGTAAGCCAGCAGAGAAAGCTGTCGTTGCTTTAGAGGAGAGTAGTT 1040
Query 1154 CAGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTAAGAAAAGTAACATCTGATC 1213
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1041 CAGGTGAGCCAAAGACACCAACCGAATCACATGAAAAGTTAAGAAAAGTAAGATCTGATC 1100
Query 1214 AAGGAAGCGCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGCTTCC 1273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1101 AAGGAAGCGCCACAACGAGCAGCAACCAGGAGAATATCGGATCATCAAGCGTAAGCAGAC 1160
Query 1274 ---GTA-ACC-AA-GTTCTTCAG-TCCACAGTAACGAA-T-CAGAAGCAAGAT-T-CA-- 1320
|| || || | || || | | || |||| || | | ||||||| || | ||
Sbjct 1161 AATGTGGACAGAACGAG-TTAAGCTTC-CA-TAACCAAGTTCTGAAGCAACATCTGCAAG 1217
Query 1321 ---CC-C-ATACCGGTAGAATCAAATCGCGAGAAAGCAGCTAGCAAGGAAGTAGAAGCTG 1375
|| | |||||||||||||||||||| | |||||||| ||||||||||||||||| ||
Sbjct 1218 ATTCCTCTATACCGGTAGAATCAAATCGTGTGAAAGCAGATAGCAAGGAAGTAGAAGTTG 1277
Query 1376 GTTCTCAAAGCACC---AA------TGAGGGGATTGCTGGACAAAGCAGTAGCACAGAGA 1426
|||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1278 GTTCTCAAAGCACCTGCAACACCAATGAGGGGATTGGTGGACAAAGCAGTAGCACAGAGA 1337
Query 1427 AACCAAAGGAAGAAGAAAGTGCGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCAT 1486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1338 AACCAAAGGAAGAAGAAAGTGTGAAACAACGTTGGAGTAGAAGCCAGAGAGAAGCTGCAT 1397
Query 1487 TGATGAAGTTCCGGTTGAAGAGGAAAGATCGATGCTTTGACAAAAAGGTTCGGTACCAGA 1546
|||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||
Sbjct 1398 TGATGAAGTTCCGGTTGAAGAGGAAAGACCGTTGCTTTGATAAAAAGGTTCGATACCAGA 1457
Query 1547 GCAGGAAGAAGCTAGCAGAACAACGTCCTCGAGTGAAAGGCCAGTTCGTGCGAACCGTGA 1606
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1458 GCAGGAAGAAGCTAGCAGAACAACGACCACGAGTGAAAGGCCAGTTCGTGCGAGCCGTGA 1517
Query 1607 ATTCAGACGCGTCTACAAAATCATGAAGAGCTCTTTCAGTTTTTCCTCTGATTTCTTTTG 1666
||||||| |||||||| ||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 1518 ATTCAGATGCGTCTACTAAATCATGAAGCTCTCTTTAAGTTTTTC-TCTGATTTCTTTTG 1576
Query 1667 TTGATTTTATAACAGAAACTTATTTAGCTTTTGCAATCTTTAGTGTGCtttttttttttA 1726
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1577 TTGATTTTGTATCAGAAACTTATTTAGCTTT-GCAATCTTTAGTGTGCTTTTTTTGTTT- 1634
Query 1727 TGTATTTGATTGGCTTCTTCTTCTCAGCTAATATGAGATACTGGGGCAACTTTTGTATAT 1786
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1635 TGTATTTG---G-CTTCTTCTTCTCAGCTAATATGAGATATTGGGGCAACTTTTGTATAT 1690
Query 1787 ATGTCTGCAAATGATCAGGCTAA 1809
|||||||||||| ||||||||||
Sbjct 1691 ATGTCTGCAAATTATCAGGCTAA 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68257719040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5