BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46820.1
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483848 jgi|Araly1|483848|fgenesh2_kg.4__2908__AT2G46820.2 1321 0.0
Ahg897013 jgi|Araly1|897013|Al_scaffold_0005_979 89.8 3e-17
> Ahg483848 jgi|Araly1|483848|fgenesh2_kg.4__2908__AT2G46820.2
Length=932
Score = 1321 bits (715), Expect = 0.0
Identities = 803/842 (95%), Gaps = 20/842 (2%)
Strand=Plus/Plus
Query 111 GATTCTTCCGAGGCTTGAAGCTCAATAGCTATGGCTTCTCTTTCAGTCTCTTCCTCTTCA 170
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 94 GATTCTTCCGAGGCTTGAAGCTCAAAAGCTATGGCTTCTCTTTCAGTCTCTTCCTCTTCG 153
Query 171 ACCATCATCGATTCAAGAGCTCCTCCTTCTCGACTAGCCTCCGCCTCCGCCTCTTCTCCG 230
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 154 ACCATCATCGATTCGAGAGCTCCTCCTTCTCGACAAGCCTCCGCCTCCGCCTCTTCTCCG 213
Query 231 TCGTGCATTTCACTTCCCACA----CT--T---CCGATTCAGTCTCATACCCGTGCCGCT 281
||||| ||||||||||||||| || | |||||||||||||||||||| ||||||
Sbjct 214 TCGTGTATTTCACTTCCCACACTTCCTCCTACGCCGATTCAGTCTCATACCCGCGCCGCT 273
Query 282 AAAGCCACTGCTTACTGTCGGAAGATTGTGAGGAACGTTGTGACGAGAGCTACTACTGAA 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 AAAGCCACTGCTTACTGTCGGAAGATTGTGAGGAACGTTGTGACGAGAGCTACTACTGAA 333
Query 342 GTTGGTGAAGCTCCTGCCACTACTACCGAAGCTGAGACTACTGAGTTACCTGAAATCGTC 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GTTGGTGAAGCTCCTGCCACTACTACCGAAGCTGAGACTACTGAGTTACCTGAAATCGTC 393
Query 402 AAGACTGCTCAAGAAGCTTGGGAGAAAGTGGATGACAAGTACGCTATTGGTTCTCTTGCC 461
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 394 AAGACTGCTCAAGAAACTTGGGAGAAAGTGGAGGACAAGTACGCTATTGGTTCTCTTGCC 453
Query 462 TTTGCTGGTGTAGTGGCTCTTTGGGGTTCTGCTGGAATGATTTCGGCAATCGATAGGCTT 521
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 454 TTTGCTGCTGTAGTGGCTCTTTGGGGATCTGCTGGAATGATTTCGGCAATCGATAGGCTT 513
Query 522 CCATTGGTTCCTGGTGTTCTTGAACTTGTAGGCATCGGTTACACAGGATGGTTCACTTAC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CCATTGGTTCCTGGTGTTCTTGAACTTGTAGGCATCGGTTACACAGGATGGTTCACTTAC 573
Query 582 AAGAACCTGGTCTTCAAACCAGACAGGGAGGCTTTGTTTGAGAAGGTCAAGAGCACATAC 641
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 574 AAGAACCTGGTCTTCAAACCAGACAGGGAGGCTCTGTTTGAGAAGGTCAAGAACACATAC 633
Query 642 AAAGACATATTAGGGAGCAGCTGAATCAAAGGAGgaagaagaagaagaagaGCCTTTTTG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AAAGACATATTAGGGAGCAGCTGAATCAAAGGAGGAAGAAGAAGAAGAAGAGCCTTTTTG 693
Query 702 AGG--CCATTCATGAATTGGAATGAAGGATA--T--CAAAAGAATCTAACACAAAGGCCA 755
|| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 694 GGGGGCCATTCATGAATTCGAATGAAGGATAGATATCAAAAGAATCTAACACAAAGGCCA 753
Query 756 CGTCCTTCCTTCAATCTTTCCTTCTTGTAACTAAATAATTTTCATCCTTtctctctctct 815
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 754 CGTCCTTCCTTCAATCTTTCCTTCTTGTAACTAAATAATTTTCATCCTTTCT-T-TCTCT 811
Query 816 gtctct-GGTCTTTTTT-AGCTCAAAGTATCATCCATTTATGTCAAAGTGTTGTAAATTC 873
|||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||
Sbjct 812 GTCTCTTGGTCTTTTTTTAGCTCAAAATATCATCCATTTATGTCAA-GTGTTGTAAATTC 870
Query 874 CTCAAGACTATATATGAGATGTTTTGTTTCATTTTCCAAAATTTCAAACTTTGTCCCCAT 933
||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||
Sbjct 871 CTCAAGACTATATATGAGATGTTTTATTTCATTTTCCAAATTTTCAAACTTTTTCACCAT 930
Query 934 TT 935
||
Sbjct 931 TT 932
> Ahg897013 jgi|Araly1|897013|Al_scaffold_0005_979
Length=324
Score = 89.8 bits (48), Expect = 3e-17
Identities = 57/61 (93%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 605 CAGGGAGGCTTTGTTTGAGAAGGTCAAGAGCACATACAAAGACATATTAGGGAGCAGCTG 664
||||||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 265 CAGGGAGGC-TTGTTTCAAAAGGTCAAGAACACATACAAAGACATATTAGGGAGCAGCTG 323
Query 665 A 665
|
Sbjct 324 A 324
Score = 78.7 bits (42), Expect = 7e-14
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 566 AGGATGGTTCACTTACAAGAACCTGGTCTTCAAACCAGACAG 607
||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AGGATGGTTCACTTACAAGAACCTGGTCTTCAAACCAGACAG 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34729977387
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5