BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46830.1
Length=2268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935667 jgi|Araly1|935667|scaffold_403655.1 2929 0.0
Ahg932610 jgi|Araly1|932610|scaffold_400598.1 320 3e-86
> Ahg935667 jgi|Araly1|935667|scaffold_403655.1
Length=1881
Score = 2929 bits (1586), Expect = 0.0
Identities = 1781/1873 (95%), Gaps = 22/1873 (1%)
Strand=Plus/Plus
Query 237 GAGGAGCTTAGTGATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GAGGAGCTTAGTGATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAA 67
Query 297 GCCATATACGATAACAAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCAT 356
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 GCCATATACGATAACGAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCAT 127
Query 357 TGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAGAAGATTGAAGAACATGTAGCAACAAA 416
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 128 TGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAAAAGATTGAAGAACATGTAGCAACGAA 187
Query 417 AACTGCTGTCCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGC 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AACTGCTGTTCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGC 247
Query 477 TGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCC 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 248 TGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGATATAGCTATTCCTCCTCCACGGCC 307
Query 537 TAAGCGTAAACCAAACAATCCTTATCCTCGAAAGACGGGAAGTGGAACG-ATCCTTATGT 595
|||||||||||||| ||||||||||||| |||||||||||||||||| | |||| ||||
Sbjct 308 TAAGCGTAAACCAAGCAATCCTTATCCTAGAAAGACGGGAAGTGGAA-GTATCCCGATGT 366
Query 596 CAAAAACGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGCATCCTG 655
|| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 367 TAACAGCGGGTGTGAATGATGGACAAGAGTCCCTTGGATCAGAAAAAGTGTCCCATCCTG 426
Query 656 AGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAG-A-AA-ACTCTGCAGGAAG 712
||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 427 AGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAGAATAATAATCTGCAGGAAG 486
Query 713 ACAACTGTTCAGATTGTTTCACTCATCAGTATCTCTCTGCTGCATCCTCCATGAATAAAA 772
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 487 AAAACTGTTCAGATTGTTTCACTCATCAGTACCTCTCTGCTGCATCCTCCATGAATAAAA 546
Query 773 GTTGTATAGAGACATCAAACGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGG 832
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GTTCTATAGAGACATCAAATGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGG 606
Query 833 GAAGTCAGAATAACAGGGTAAGAAAGGAGTCAAACTC--------A----GATTTGAATG 880
||||||||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct 607 GAAGTCAGAATAACAGGATAAGAAAGGAGTCAAACTCAGAGAATTACTGTGATTTGAATG 666
Query 881 CAAAATCTCTGGAAAACGGTAATGAGCAAGGACCTCAGACTTATCCGATGCATATCCCTG 940
|||||||||| |||| || ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 667 CAAAATCTCTAGAAACCGATAATGAGCAAGGACCTCAGACTTATCCAATGCGTATCCCTG 726
Query 941 TGCTAGTGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAG 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TGCTAGTGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAG 786
Query 1001 ATAGTCATCCCCACACAGTTGCAGGAGATTATCAGTCGTTTCCTAATCATATAATGTCAA 1060
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACAGTCATCCCCACATTGTTGCAGGAGATTATCAGTCGTTTCCTAATCATATAATGTCAA 846
Query 1061 CCCTTTTACAAACACCGGCTCTTTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTC 1120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 847 CCCTTTTACAAACACCGGCTCTCTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTC 906
Query 1121 CCGATTCTAGTGGTGGCTCACCTGTTCCAGGGAACTCACCTCCGAATCTGGCTGCCATGG 1180
|||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 907 CCGATTCTAGTGGTAGCCCACCTGTTCAAGGGAACTCACCTCCGAATCTGGCTGCTATGG 966
Query 1181 CCGCAGCCACTGTTGCAGCTGCTAGTGCTTGGTGGGCTGCCAATGGATTATTACCTTTAT 1240
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 967 CCGCTGCCACTGTTGCAGCTGCAAGTGCTTGGTGGGCTGCCAATGGATTGTTACCTTTAT 1026
Query 1241 GTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCAT 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCCG 1086
Query 1301 GTGATGTAGAGTACACAAAAGCAAGCACTTTACAACATGGTTCTGTGCAGAGCCGAGAGC 1360
|||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||
Sbjct 1087 GTGATGTAGAGTACACAAAAACAAGCACTTTACAGCATGTTTCTGCGCAGAGCCGAGAGC 1146
Query 1361 AAGAACACTCCGAGGCATCAAAGGCTCGATCTTCACTGGACTCAGAGGATG-TTGAAAAT 1419
|||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1147 AAGAACACTCTGAGGCATCAAAGGCTCGATCTTCATTGGACTCAGAGGA-GATTGAAAAT 1205
Query 1420 AAGAGTAAACCAGTTTGTCATGAGCAGCCTTCTGCAACACCTGAGAGTGATGCAAAGGGT 1479
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1206 AAGAGTAAACCAGATTGTCATGAGCAGCCTTCTGCAACATCTGAGAGTGATGCAAAGGGT 1265
Query 1480 TCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCCTCGTGTGGCTCAAACACTCCG 1539
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1266 TCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCTTCGTGTGGCTCAAACACTCCC 1325
Query 1540 TCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAAAGGCAAGAGGATGGCACCAATGGT 1599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1326 TCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAGAGGCAAGAGGATGGCACCAATGGT 1385
Query 1600 GAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTCCAATGCACGC 1659
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1386 GAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCAATGCACGC 1445
Query 1660 CGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACGAGGGTCGA 1719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1446 CGCAGTAGAATCAGCTCCAATATAACCGATCCTTGGAAGTCTGTGTCTGACGAGGGTCGA 1505
Query 1720 ATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTGCCGCAAAGTTTTACATATCGagaa 1779
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1506 ATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTACTACCGCAAAGCTTTACATATCGAGAA 1565
Query 1780 gaacacagagaggaagaacaacaacaacaagaacaaagaTATCCAATGGCACTTGATCTT 1839
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1566 GAACACAGAGAGGAGGAACAACAACAACAA---CAAAGATATCCAATGGCACTTGATCTT 1622
Query 1840 AACTTCACAGCTCAGTTAACACCAGTTGATGATCAAGAGGAGAAGAGAAACACAGGATTT 1899
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1623 AACTTCACAGCTCAGTTAACTCCAGTTGATGATCAAGAGGAGAGGAGAAACACAGGATTT 1682
Query 1900 CTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGTAGAGGAAGAACAGGTTTTAAACCA 1959
|| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 1683 CTCGGAATCGGATTGGATGCTTCAAAGCTGATAAGTAGAGGAAGAACAGGTTTCAAACCA 1742
Query 1960 TACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACAACAATCCTATCATT 2019
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1743 TATAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACACCAATCCTATCATT 1802
Query 2020 CATGTGGAACAGAAAGATCCCAAACGGATGCGGTTGGAAACTCAAGCTTCCACATGAGAC 2079
||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||||| ||
Sbjct 1803 CATGTGGAACAGAAAGACCCCAAACGGATGAGGTTGGAAAGTCAAGCTTCGACATGAAAC 1862
Query 2080 TCTATTTTCATCT 2092
|||||||||||||
Sbjct 1863 TCTATTTTCATCT 1875
> Ahg932610 jgi|Araly1|932610|scaffold_400598.1
Length=345
Score = 320 bits (173), Expect = 3e-86
Identities = 205/220 (93%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 1876 GAGGAGAAGAGAAACACAGGATTTCTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGT 1935
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 120 GAGGAGAAGAGAAACACAGGATTTCTCAGAATCGGATTGGATGCTTCAAAGCTAATAAGT 179
Query 1936 AGAGGAAG---AACAGGTTTTAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGT 1992
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAGGAAGAACAACAGGTTTCAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGT 239
Query 1993 AGAATCCTCAACAACAATCCTATCATTCATGTGGAACAGAAAGATCCCAAACGGATGCGG 2052
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 GGAATCCTCAACAGCAATCCTATCATTCATGTGGAACAGAAAGACCCCAAACGGATGCGG 299
Query 2053 TTGGAAACTCAAGCTTCCACATGAGACTCTATTTTCATCT 2092
|| ||||||||||||| |||||| |||||||||||||||
Sbjct 300 CTGAAAACTCAAGCTTCGACATGAAACTCTATTTTCATCT 339
Score = 189 bits (102), Expect = 8e-47
Identities = 116/123 (94%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1592 CCAATGGTGAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTCCA 1651
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1 CCAATGGTGAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCA 60
Query 1652 ATGCACGCCGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACG 1711
||||||| || | || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ATGCACGTCGTATTATAATCAGCTCTAATATAACCGATCCATGGAAGTCTGTGTCTGACG 120
Query 1712 AGG 1714
|||
Sbjct 121 AGG 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85398329290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5