BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46900.1
Length=2212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483858 jgi|Araly1|483858|fgenesh2_kg.4__2918__AT2G46900.1 3123 0.0
> Ahg483858 jgi|Araly1|483858|fgenesh2_kg.4__2918__AT2G46900.1
Length=2224
Score = 3123 bits (1691), Expect = 0.0
Identities = 2065/2238 (92%), Gaps = 56/2238 (3%)
Strand=Plus/Plus
Query 1 AGAGAAGCGAGGGATTAGC--GTGTATCGACGAGATAATCATCTAGTCGTCGGTGTCGCC 58
||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||
Sbjct 1 AGAGAAGCGAGGGATTAGCGTGTGTATCGACGAGAT-ATCATCTA---GTCGGAGTCGCC 56
Query 59 GCCTTTCTCCGCCGTCTGAAATCGTCCTTGTTCGATTTTCCGAAGACGAAGCAGGAG-AA 117
||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||
Sbjct 57 GCCTTTCTCCGCCGTCTTTAATCGTCCTTGTTGGATTTTCCGAAGACGAAGCAGGCGTAA 116
Query 118 GATATGTCTGGGAGGTTGCTGAAGAAGGTTCTCCAGGAACATGAAGATTCGAAACTTCAG 177
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 117 -ACATGTCTGGGAGGTTGCTGAAGAAGGTTCTCCAGGAACACGAAGAATCGAAACTCCAG 175
Query 178 AAACATCAC------gaagaag-a-a-gaagaaga-g--gacgaagaagaaTCAGGAGCC 225
||||||||| ||||||| | | |||||||| | || ||||||||||||||||||
Sbjct 176 AAACATCACGAAGAAGAAGAAGAAGAGGAAGAAGAGGAAGAAGAAGAAGAATCAGGAGCC 235
Query 226 CGTTCTTCGATTAATCCATTCGATCTCTTGAACGATGGTGATGAAGATCCTGA-G-G--A 281
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |
Sbjct 236 CGTTCTTCGATTAATCCATTCGATCTCTTGAACGACGGTGATGAAGATCCTGAGGAGATA 295
Query 282 GA--TTGATGATGAGACTATAGCTGAGAAGAAGAACGAAGATGCGGATCATCAGTC-AAG 338
|| |||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 296 GAGGTTGATGATGAGACTATAGTTGTGAAGAAGAACGAAGATGCGGATCATCAGTCAAAG 355
Query 339 TGTCGCTGATCATGTGCAGCCGGTGTCaaagaataagtcgaagaaaaagaaaaagaagaa 398
| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 AAT-GTTGATAATGTGCAGCCGGCGTCAAAGAATAAGTCGAAGAAAAAGAAAAAGAAGAA 414
Query 399 gaacaaagagaGTGGCTCTAATGTGCCTAAAGCTGAAATGACTTTGGATGAAACTTTGGA 458
|||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 415 AAACAAAGAGAGTGGTTCTAATGTGGCTAAAGCTGAAATCACTTTGGATGAAACTTTAGA 474
Query 459 AGCACTTGGTCTCAATGCTAACTCTAAGCAAGATAAGGTTCAGGAGACAAAACCAAATGC 518
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 475 AGCACTTGGTCTCAGTGCTAACTCTAAGCAAGATAAGGTTCAGGAGACTAAAGCAAATGC 534
Query 519 TGATTCTTCCAAAAAGGCTTCTTCACGATTTGTGTTGGAAATAGATTCCAAGTATCTGAA 578
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 535 TGATTCTTCCAAAAAGGCTTCTTCACGATTTGTGTTGGAAGTAGATCCCAAGTATCTGAA 594
Query 579 TCTTGAGAACGAGTTGAGGAGAACGTATGGTTCAAAGGCTATGCGATCATTTGAGAGTGA 638
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 595 TCTTGAGAACGAGTTGAGGAGAATGTATGGTTCAAAGGCTATGAGATCATTTGAGAGTGA 654
Query 639 GAGTGGCTCTCAAGGTGGTAGTAGCTCT-----AG-ACGAGGGGGAAGGCGTGGAGTCCA 692
||||||||||||||||||| |||||||| || ||||||||| || |||||||||||
Sbjct 655 GAGTGGCTCTCAAGGTGGTGGTAGCTCTAGACAAGTACGAGGGGGTAGACGTGGAGTCCA 714
Query 693 TCATATCACAAAGACGGTTCTGGTATCTCCAAAAGAGAATTGGTCTCGATGGGATAGATC 752
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 715 TCATATCACAAAGACGGTTCTGATATCTCCAAAGGAGAATTGGTCTCGCTGGGATAGATC 774
Query 753 TTTCTCAATGGAGTTTCTAGAGACTAAAGATGGTAACAACTACTTCAGATATACCCATTC 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTTCTCAATGGAGTTTCTAGAGACTAAAGATGGTAACAACTACTTCAGATATACCCATTC 834
Query 813 ATCCTCATATGAGCAGGCTCAGAGAGCATTTCAGGCTGCACAAGCTATCCATGATTTGAA 872
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 835 ATCCTCATATGAGCAGGCTCAGAGGGCATTTCAGGCTGCACAGGCTATCCATGATTTGAA 894
Query 873 TGGTGTAGCAAGTGTCCTTATACACAATCCTTACCATATTGAGTCGCTCATAACTATGGC 932
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 895 TGGTGTAGCAAGTGTCCTTATACACCATCCTTACCATATTGAGTCGCTCATAACTATGGC 954
Query 933 GGATTACTTTAAGTTTGTAGGTGAGAATGATATGGCTGCAGATTCCATTGGAAAATGCTT 992
||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 955 GGACTACTTTAAGTTTGTTGGTGAGCATGATATGGCTGCAGATTCCATTGGAAAGTGCTT 1014
Query 993 GTACGGTTTGGAGCGTGCGTGGCATCCTATGTTCACTCCGTTCCAGGGTAACTGCCGGTT 1052
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1015 GTACGGATTGGAGCGTGCATGGCATCCTATGTTCACTCCGTTCCAGGGTAATTGCCGGTT 1074
Query 1053 GGAGTTTAACCACGATGA-AAACAAGCTGTTCTTCAAGACGCTTTTCACTCACATGAGAA 1111
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GGAGTTTACCCACGA-GACAAACAAGCTGTTCTTCAAGACGCTTTTCACTCACATGAGAA 1133
Query 1112 ACATGGACAGGCGTGGCTGTCATAGGTCAGCGTTGGAGGTCTGCAAACTCTTGCTTTCCT 1171
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1134 ACATGGACAGGCGTGGCTGTCATAGGTCAGCGTTGGAGGTCTGCAAATTCTTGCTTTCGT 1193
Query 1172 TGGACACGAGTAATCCTGTGGGCGCTTTGTTTTGTGTGGACTACTTTGCTTTGAGAGCAG 1231
|||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGGACATGAGTGATCCAGTAGGCGCTTTGTTTTGTGTGGACTACTTTGCTTTGAGAGCAG 1253
Query 1232 AGGAGTATGCGTGGCTGGAGCAATTCTCGGAGGAGTACCGAAATGATAACTCATTATGGC 1291
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1254 AGGAGTATGCGTGGCTGGAGCAATTCTCGGAGGAGTACCGCAATGACAACTCATTATGGC 1313
Query 1292 TCTTTCCGAATTTCTCTTATTCGCTTGCAATAGCACGAGTTTATCTTGAAAAGATGGAGC 1351
|||| || |||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 1314 TCTTCCCTAATTTCTCTTATTCGCTTGCTATAGCCCGAGTTTATCTCGAGAAGATGGAGT 1373
Query 1352 CTACCTCTTCCTCAGAAGCCACTCCCAG-AGATACTTCGAAG-CAAAGCTCTTTGGATCT 1409
|| ||||||| ||||||||||||| | | ||||||||||||| ||| |||||||||||||
Sbjct 1374 CTTCCTCTTCATCAGAAGCCACTCAC-GTAGATACTTCGAAGTCAA-GCTCTTTGGATCT 1431
Query 1410 CATGACGCAAGCTTTGAAGCTTCATCCAACAGTACTCAACAAACTAGTGGAAAAAGTACC 1469
|||||| |||||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 1432 CATGACACAAGCTTTGAAGCTTCATCCAACAGTACTCAAGAAGCTAGTGGACAAGGTACC 1491
Query 1470 TTTAAAAGATCAGGCATGGACAAAGATACTCAAGCATTCTTACTTCCGATCAGATGAATC 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 TTTAAAAGATCAGGCATGGACAAAGATACTCAAGCATTCTTACTTCCGATCAGATGAATC 1551
Query 1530 AAAGATCCCGTCTTTAGATCACCTCATCAAAATATATGTTGAGAGGAATTATCTTATATG 1589
||||||||| || || |||||||| || || ||||||| || |||||||| ||||||||
Sbjct 1552 AAAGATCCCATCCTTGGATCACCTTATTAACTTATATGTCGAAAGGAATTACCTTATATG 1611
Query 1590 GAGGCTTCCAGATGTACAGAAATTGCTTCGGAGCGCTGCTGATTTAGTCATTGAATCTCT 1649
||||||||||||||| ||||| |||||||| || |||||||||||||||||||| || ||
Sbjct 1612 GAGGCTTCCAGATGTCCAGAAGTTGCTTCGCAGTGCTGCTGATTTAGTCATTGAGTCGCT 1671
Query 1650 GGAACAAGATGGAACCGAAGCTGAGAGCTGGCTTTGTGTAAG-ATTAGAAGCTTTCTCTT 1708
||||||| | ||||||||||| |||||||||||||||||||| | |||||| ||||||
Sbjct 1672 GGAACAAAACGGAACCGAAGCCGAGAGCTGGCTTTGTGTAAGGAA-AGAAGCCTTCTCTG 1730
Query 1709 CTGAGAATAACCAGTACTCTCATTTATCAACCCATGATTTCTCTGATTCGATGCCAACTC 1768
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1731 CTGAGAATAACCAGTACTCTCATTTATCAACACATGATTTCTCTGATTCGATGCCAACTC 1790
Query 1769 TCCCACCAGACAATTTGCAGAACTTTGTGGCTGATCCAAGAATGGTGGGAGGAGAGCAAA 1828
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCCCACCAGACAATCTACAGAACTTTGTGGCTGATCCAAGAATGGTGGGAGGAGAGCAAA 1850
Query 1829 TGGCTGAAGGTGGCGGGAGAGGTCAAC-ACCAAGCACCACCACCACGTCCACGTGATTTG 1887
|||||||||| |||||| ||||||||| || |||||||||||| ||||||||||| ||
Sbjct 1851 TGGCTGAAGGCGGCGGGGGAGGTCAACGAC-AAGCACCACCAC---GTCCACGTGATGTG 1906
Query 1888 GCAAATCGGAGTCCATTAGCTGTGTTGATTGAGTCAATACTTCCATGGGCTAATTTTGGA 1947
|||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1907 GCAAATCGGAATCCATTTGCTGTGTTGTTTGAGTCAATACTTCCATGGGCTAATTTTGGA 1966
Query 1948 GATGGAGAGGATGAGATTGCACATGATGCTCACCACCAACCAGACAACAATGGCTAA-TC 2006
|||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 1967 GATGAAGACGATGAGATTGCACATGATGGTCAGCACCAACCAGACAACAATGGCTAAATC 2026
Query 2007 AATGGCTCTAACTGAAGAAAGAAGAAAACTGCTTTAAAGTTTACAAAATGTGGCCTTCCT 2066
|||||||||||||||| |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 2027 AATGGCTCTAACTGAATAAAGAAGAAAACTGGTACAAATTTTACAAAATGTGGCCTTGCT 2086
Query 2067 TTTGTTGTACAGTGCCATTTTGATGGTTTAGTCTATGGA-TC---A--TTTGTTACTT-G 2119
||||||||||||||||||||||||||||||||||| ||| || | |||| ||||| |
Sbjct 2087 TTTGTTGTACAGTGCCATTTTGATGGTTTAGTCTAAGGACTCGTGAAATTTGATACTTTG 2146
Query 2120 GGTAAATCGGACTTGGTCATTTTCGATTCATGTT-CTGGTGGAATAATTGACAGCTTTCA 2178
||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2147 GGTAAATCGGATTTAGTCATTTTCAATTCATGTTTCTGGTGGAATAATTGACAGCTTTCA 2206
Query 2179 TTGCTCAAAGGCTCGGTT 2196
|||| |||||||||||||
Sbjct 2207 TTGCCCAAAGGCTCGGTT 2224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83265275570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5