BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46910.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935674 jgi|Araly1|935674|scaffold_403662.1 1434 0.0
> Ahg935674 jgi|Araly1|935674|scaffold_403662.1
Length=895
Score = 1434 bits (776), Expect = 0.0
Identities = 851/887 (96%), Gaps = 5/887 (1%)
Strand=Plus/Plus
Query 47 GTTCGAAAATGGATCGAATTGCGTCTGCGACTTTCTCTTGCCCTGCGATTTCATTGTCCC 106
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 13 GTTCGAAAATGGATCGAATTGCGTCTGCGACCTTCTCTTGCCCTGCGATTTCAATGTCTC 72
Query 107 GCGTCTGTAGAATCAGCCCTTTTGGCTTAAACATTAAAACCAACCATAGAAAGAGATTCT 166
||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 73 GCGTCTGTAGAATCAACCCTTTTGGCTCAAACATTAACACCAATCATAGAAAGAGATTCT 132
Query 167 CGTGT-CGAGTAGCTGTAGCTTCTGGAGAGACTTCGGCCAGGGTCGTCGTCGACAATGAA 225
||||| | | |||||||||||||||||||||| ||| | || ||||| |||||||||
Sbjct 133 CGTGTCCTA-TAGCTGTAGCTTCTGGAGAGACGACGG-CTCGG--GTCGTAGACAATGAA 188
Query 226 CTTGACTTAGAACACAAGAAACACGATCTACTGAGAGCTGTTCAAGACACTCAACGAGGA 285
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 189 CTTGACTTAGAACACAAGAAACACGATCTGCTGAGAGCTGTTCAAGACACTCAACGAGGG 248
Query 286 CTCACTGCCACTTCTGATCAACGATCTATCATTGAGGAGGCTCTGGTGACTGTGGAAGGG 345
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 249 CTCACTGCCACTTCTGATCAACGATCTATCATCGAGGAGGCTCTGGTGACTGTGGAAGGG 308
Query 346 TTTAATGGCGGTGAAGAAATTGATCCAGTGAAGTTAGATGGAACATGGAGGCTACAATAT 405
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 309 TTTAATGGCGGTGAAGAAATCGATCTAGTGAAGTTAGATGGAACATGGAGGCTACAATAT 368
Query 406 ACATCTGCACCTGATGTTGTTGTTCTGTTTGAAGCTGCTTCAAGACTTCCCTTCTTTCAG 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ACATCTGCACCTGATGTTGTTGTTCTGTTTGAAGCTGCTTCAAGACTTCCCTTCTTTCAG 428
Query 466 GTAGGGCAGGTCTTTCAGAAGTTTGAGTGCAGAGATAGATCCGACGGTGGGATCATTCGG 525
|| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 429 GTGGGGCAGGTCTTCCAGAAGTTTGAGTGCAGAGATCGATCAGACGGTGGGATCATTCGG 488
Query 526 AATGTTGTTCAGTGGAGTCTTCCAAGCTTGTTGGAGGAGCAAGAAGGTGCAACACTTGTT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AATGTTGTTCAGTGGAGTCTTCCAAGCTTGTTGGAGGAGCAAGAAGGTGCAACACTTGTT 548
Query 586 GTTACCGCGAAATTTGATAAGGTCTCTAGTCGAAACATCTACCTTCAGTTTGAAGAGATA 645
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GTTACCGCGAAATTCGATAAGGTCTCTAGTCGAAACATCTACCTTCAGTTTGAAGAGATA 608
Query 646 AGTGTTAGAAACATTAACATCAATGAGCAGCTTCAAGCTCTTATCGCACCTGCAATACTT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AGTGTTAGAAACATTAACATCAATGAGCAGCTTCAAGCTCTTATCGCACCTGCAATACTT 668
Query 706 CCACGCTCATTTCTAAGCCTACAGCTTTTGCAGTTTATCCGTACTTTCAAAGCTCAGATT 765
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CCACGCTCATTTTTAAGCCTACAGCTTTTGCAGTTTATCCGTACTTTCAAAGCTCAGATT 728
Query 766 CCAGTAAACGCAACCAGCCCAGGAAGGAGATCTGTAGGTGGATTGTATTACCTATCGTAT 825
||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 729 CCAGTAACCGCAACCAGCCCAGGAAGGAGATCTGTTGGTGGATTGTATTACCTGTCGTAT 788
Query 826 CTCGATAACAACATGCTTTTGGGACGGTCTGTAGGAGGAGGAGGAGTATTTGTCTTTACA 885
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 789 CTCGATAATAACATGCTTTTGGGTCGGTCTGTAGGAGGAGGAGGAGTATTTGTCTTTACA 848
Query 886 AAATCTCAACCCCTCGAGCTGTGAGCATCAGACAAATCTATAAAACT 932
||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 849 AAATCTCAACCCCTCGAGCTGTGAGAATCAGACAAATCTATATAACT 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5