BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46940.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1 944 0.0 Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659 95.3 6e-19 > Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1 Length=715 Score = 944 bits (511), Expect = 0.0 Identities = 661/728 (91%), Gaps = 32/728 (4%) Strand=Plus/Plus Query 46 TAACTCTTCACTTTCTTCGGTCATATCTTTAATGGGGTCTGAAGAGAGAATGATGAT-AA 104 |||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| || Sbjct 1 TAACTCTTCACTTTCTTCTGTC-TATCTTTAATGGCCTCTGAAGAGAGCATGATGATGAA 59 Query 105 GTTCTTCTT-CAGTTCTAGACGAAGAGTATGAATATACAGATGATGGGTTTCATTACGAG 163 ||||| || || || ||||||||||||||||| ||||||||||||||||||||| | || Sbjct 60 -TTCTTGTTCCA-TTATAGACGAAGAGTATGAAGATACAGATGATGGGTTTCATTGCCAG 117 Query 164 ACAAGGCAAAACAGTTTGTCTAGATTATCTATCTGCACAAACTCCTTCCACGAAGACGAC 223 ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| Sbjct 118 ACAAGGCAAAACAGTTTGTCTAGGTTATCTATCTGCACAAGTTCCTTCAACGAAGACGAT 177 Query 224 GAAGATCATCCTTCAGAATTGGGTAATTTCTTCTCTACGTTGTCGT-TAGAGAGCTTCAA 282 || ||| |||||||||| |||||||||||| ||||||||||||| | ||||||||||| | Sbjct 178 GATGATAATCCTTCAGAGTTGGGTAATTTCATCTCTACGTTGTC-TCTAGAGAGCTTC-A 235 Query 283 C-GACGACGTCGGAGCCGAAGCTGACGTAGAAATCTCCGATGACGGTGGCGAATCGGATT 341 | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 236 CTGACGACGTCGGAGCCGAAGCTGACGGAGAAATCTCCGATGACGGTGAAGAATCGGATT 295 Query 342 CCGACAAAGACTCTTCCGGATTTTACTCTCTACCGACGATCACATCTCGCCGGAGAAGAA 401 |||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 296 CCGATAAAGAATCTTCCGGATTCTACTCTCTCCCGACGATCACATCTCGCCGGAGAAGAA 355 Query 402 AACTCACAGTTTCCGGCGGTTTAGAAACGAGCAAAGAGAGTGAGACGAAAGTCGATGGGA 461 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | Sbjct 356 AACTCACAGTTTCCGGCGGTTCAGAAACGAGCAAAGAGAGTGAGACGAAAATCGATGGAA 415 Query 462 GTAAGTGTAATATAGTTAGTCAACGGAGGGTATTAAGGGAAAAGAGTAAAAGAGGG-AAT 520 ||||||||| || |||||||||||||||| |||||| |||||||| ||| ||| Sbjct 416 GTAAGTGTA-----GT----CAACGGAGGGTATTAACGGAAAATAGTAAAAG-GGGTAAT 465 Query 521 CAGTACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 580 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 CAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 525 Query 581 GTGTTAACGAAGGTGAGGGGAGGGAAGAAGAAGTCAATGAAGATGGGGTTTGAAGAAGTC 640 ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 526 GTGTTAACGAAGGTGAGAGGAGGGAAGAAG---TCAATGAAGATGGGGTTTGAAGAAGTG 582 Query 641 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCA------G-- 692 ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 583 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCAATATCCGCC 642 Query 693 GG-TCAAACCGTGAAACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 751 || |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 GGGTCAAACCGAGAGACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 702 Query 752 AGTCCTGG 759 |||||||| Sbjct 703 AGTCCTGG 710 > Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659 Length=741 Score = 95.3 bits (51), Expect = 6e-19 Identities = 66/73 (90%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 761 GATGATCCGAAA-GAGGTTAAGGCGAGATTAAAGATGTGGGCACAAGCAGTAGCTTTAGC 819 |||||||| ||| |||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 658 GATGATCC-AAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTAGC 716 Query 820 TTCTGCGTCACGT 832 ||||||| ||||| Sbjct 717 TTCTGCGACACGT 729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5