BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46950.1
Length=2120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902749 jgi|Araly1|902749|Al_scaffold_0004_3399 2433 0.0
Ahg328921 jgi|Araly1|328921|fgenesh1_pm.C_scaffold_7001148 904 0.0
> Ahg902749 jgi|Araly1|902749|Al_scaffold_0004_3399
Length=1554
Score = 2433 bits (1317), Expect = 0.0
Identities = 1477/1556 (95%), Gaps = 4/1556 (0%)
Strand=Plus/Plus
Query 239 ATGGAGCTCCTGAGCACGATCAATCTCTTAGCAATAGCTCTAGTGCTTCTTGTAGTTCCG 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGCTCCTGAGCACGATCAATCTCTTAGCAATAGCTCTAGTGCTCCTTGTAGTTCCG 60
Query 299 AAGATATATGGAGCTTGTCGGATCCTTGTTTGGCGGCCATGGATGCTATCGAGAAGATTC 358
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 61 AAGATATATGGAGCTTGTCGGATCCTTGTTTGGCGGCCATTGATGCTATCAAGAAAATTC 120
Query 359 AAGAAGCAAGGAATCTCTGGTCCAAAATACAGGATCTTGTATGGGAACCTCCGAGAGATT 418
||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct 121 AAGAAGCAAGGAATCTCAGGCCCAAAATACAGGATCTTGTACGGGAACCTCCGCGAGATT 180
Query 419 AGGAAGATGAAGAACGAAGCTAAGCTTATGGTTCTTGATCCAAACTCCAACGATATCGTC 478
|||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 181 AGGAAGGTGAAGAACGCAGCTAAGCTTAAGATTCTTGATCCAAACTCCAACGATATCGTC 240
Query 479 CCTCGCGTCTTACCTCATCTTCAGCAATGGAAGTCTCAATATGGAGAGACCTTTCTTTAC 538
|||||| | ||| |||||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct 241 CCTCGCCTTTTAGCTCATCTTCAGCAATGGATGTCTCAATACGGAGAGACTTTTCTTTAC 300
Query 539 TGGCAAGGAACAGATCCAAGGTTGTGCATCTCAGATCATGAGCTCGCGAAACAGATCTTA 598
|||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 TGGCAAGGTACAGAGCCAAGGTTATGCATCTCAGATCATGAGCTAGCGAAACAGATCTTA 360
Query 599 TCGAACAAGTTTGtttttttttCTAAATCAAAGACAAAACCTGAGATCCTTAAACTTTCT 658
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TCGAACAAGTTTGGTTTTTTTGCTAAATCAAAGACAAAACCTGAGATCCTTAAACTTGCT 420
Query 659 GGTAATGGACTTATCTTCGTAAATGGTCTTGATTGGGTTCGTCACAGACGAATCTTAAAC 718
||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 421 GGTAATGGACTTATCTTCGCAAATGGTCTTGATTGGGTTCGGCATAGACGAATCTTAAAC 480
Query 719 CCTGCATTCTCTATGGACAAACTCAAGCTCATGACCCAATTGATGGTGGATTGCACTTTT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTGCATTCTCTATGGACAAACTCAAGCTCATGACCCAATTGATGGTGGATTGCACTTTG 540
Query 779 AGAATGTTCCTTGAGTGGAAAAAACAGAGGAATGGTGTAGAAACAGAGCAATTTGTGTTG 838
||||||||| |||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 541 AGAATGTTCGACGAGTGGGGAAAACAGAGGAATGGTGGCGAAACAGAGCAAGTGGTGTTG 600
Query 839 ATTAGCAGAGAGTTTAAGAGATTGACCGCTGATATCATAGCGACGGCTGCGTTTGGAAGC 898
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 ATTAGCAGAGAGTTTAAGAGATTGACCGCTGATATCATAGCCACGGCTGCGTTTGGAAGC 660
Query 899 AGTTATGCGGAAGGAATTGAAGTATTTAAATCACAATTAGAGCTCCAAAAGTGTTGTGCT 958
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 661 AGTTATGCGGAAGGAATCGAAGTGTTTAAATCACAAATAGAGCTCCAAAAGTGTTGTGCT 720
Query 959 GCTGCTCTTACTGACCTCTATTTCCCTGGAATCCAGTACCTTCCTACGCCTTCGAATCTT 1018
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTTCTCTTACTGACGTCTATTTCCCTGGAATCCAGTACCTTCCTACGCCTTCGAATCTT 780
Query 1019 CAAATATGGAAGCTTGATATGAAAGTGAATAGCTCGATCAAAAGAATCATAGATGCGAGG 1078
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 CAAATATGGAAGCTTGATAGGAAAGTGAATAGCTCGACCAAAAGAATCATAGATGCGAGG 840
Query 1079 TTAACATCGGAATCCAAAG-ATTACGGAAACGATCTTCTGGGAATCATGTTAACAGCTGC 1137
||| |||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 841 CTAAAATCGGAATCC-AAGAATTACGGAAATGATCTTCTGGGAATCATGTTAACAGCTGC 899
Query 1138 AAGCTCTAACGAGTCTGAGAAAAAGATGAGCATTGATGAGATCATAGAAGAATGCAAGAC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGCTCTAACGAGTCTGAGAAAAAGATGAGCATTGATGAGATCATAGAAGAATGCAAGAC 959
Query 1198 GTTCTTCTTCGCAGGACACGAAACTACTGCGAATCTATTGACATGGAGTACAATGTTGCT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTTCTTCTTCGCAGGACACGAAACTACTGCGAATCTATTGACATGGAGTACAATGTTGCT 1019
Query 1258 TAGCTTGCACCAAGATTGGCAAGAGAAACTCAGAGAAGAAGTTTTCAATGAATGCGGTAA 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TAGCTTGCACCAAGATTGGCAAGAGAAACTCAGAGAAGAAGTTTTCAATGAATGTGGTAA 1079
Query 1318 AGACAAAATCCCAGATGCAGAGACATGCTCCAAACTAAAACTGATGAACACGGTGTTTAT 1377
|||||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 1080 AGACAAAATCCCAGATTCAGAGACATGCGCCAAACTCAAACTGATGAACATGGTGTTTAT 1139
Query 1378 GGAGTCCCTTCGTCTATACGGACCAGTGTTAAATCTGCTCCGATTAGCATCAGAAGATAT 1437
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 GGAGTCACTTCGTCTATACGGACCAGTGTTAAATTTGCTCCGATTAGCATCAGAAGATAT 1199
Query 1438 GAAATTAGGAAACCTAGAGATCCCTAAAGGCACGACTATAATCCTCCCGATTGCGAAGAT 1497
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1200 GAAATTAGGAAACCTAGAGATCCCTAAAGGCACGACTATAGTCCTCCCGATTGTGAAGAT 1259
Query 1498 GCACAGAGACAAAGCCGTTTGGGGAAGTGACGCCGACAAATTCAACCCTATGCGGTTTGC 1557
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCACAGAGACAAAGCCATTTGGGGAAGTGACGCCGACAAATTCAACCCTATGCGGTTTGA 1319
Query 1558 AAACGGTCT-TTCTCGGGCCGCTAATCATCCGAACGCTCTCCTCGCGTTTTCAATGGGAC 1616
|||||| | |||||||||||||||||| || |||||||| |||||||||||||| ||||
Sbjct 1320 AAACGG-CAATTCTCGGGCCGCTAATCACCCAAACGCTCTTCTCGCGTTTTCAATCGGAC 1378
Query 1617 CAAGAGCTTGCATTGGCCAAAACTTTGCGATAATGGAAGCCAAGACCGTTCTCGCCATGA 1676
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1379 CAAGAGCTTGCATTGGCCAAAACTTTGCCATAATGGAAGCCAAGACCGTTCTTGCCATGA 1438
Query 1677 TTCTTCAACGGTTCCGGCTCAATCTCTCCGCCGATTATAAACATGCGCCGGCGGATCACC 1736
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 1439 TTCTTCAACGGTTCCGGCTCAATCTCTCCGTCGATTATAAACACGCGCCAGCGGATCACC 1498
Query 1737 TCACTCTTCAACCTCAGTACGATCTACCTGTGATACTTGAACCTATCGACGGTTGA 1792
|||||||||| |||||||||||| |||||||||| ||| |||| ||||||||||||
Sbjct 1499 TCACTCTTCAGCCTCAGTACGATTTACCTGTGATGCTTCAACCCATCGACGGTTGA 1554
> Ahg328921 jgi|Araly1|328921|fgenesh1_pm.C_scaffold_7001148
Length=1563
Score = 904 bits (489), Expect = 0.0
Identities = 1200/1535 (78%), Gaps = 81/1535 (5%)
Strand=Plus/Plus
Query 251 AGCACGATCAATCTCTTAGCA-ATAGCTCTAGTGCTTC-TT-GTAG-TTCCGAAGATATA 306
||||||||||||||||||||| || ||| ||| || || || | |||| ||| |||
Sbjct 13 AGCACGATCAATCTCTTAGCACTTA-TTCTTCTGC-TCTTTGGT-GTTTCC-AAG--ATA 66
Query 307 TGG--AGCTTGTCGGATCCTTGTTTGGCGGCCATGGATGCTATCGAGAAGATTCAAGAAG 364
||| ||||||| ||||| | ||| |||||||| ||||||||| | ||||||||||||
Sbjct 67 TGGAAAGCTTGTTGGATCATCCTTTTGCGGCCATTGATGCTATCAAAAAGATTCAAGAAA 126
Query 365 CAAGGAATCTCTGGTCCAAAATACAGGATCTTGTATGGGAACCTCCGAGAGATTAGGAAG 424
||||||||||| || ||||| |||| |||||||| || ||||| | ||||| | ||||
Sbjct 127 CAAGGAATCTCAGGCCCAAAGTACAAAATCTTGTACGGAAACCTAAGCGAGATAAAGAAG 186
Query 425 ATGAAGAACGAAGCTAAGCTTATGGTTCTTGATCCAAACTCCAACGATATCGTCCCTCGC 484
|||||||| |||||| | ||| ||||||| ||||| || |||||||||||| |||||||
Sbjct 187 ATGAAGAAAGAAGCTGACCTTTTGGTTCTGGATCCGAAGTCCAACGATATCTTCCCTCGT 246
Query 485 GTCTTACCTCATCT-TCAGCAATGGAAGTCTCAATATGGAGAGACCTTTCTTTACTGGCA 543
|| || |||||| | ||| ||||||| ||||||||| ||||| || ||||| |||||| |
Sbjct 247 GTGTTTCCTCAT-TATCACCAATGGATGTCTCAATACGGAGAAACATTTCTATACTGG-A 304
Query 544 A-GGAACAGATCCAAGGTTGTGCATCTCAGATCATGAGCTCGCGAAACAGATCTTATCGA 602
| |||||| | |||| | | | ||||||| ||||||| || |||||||||||||| ||||
Sbjct 305 ATGGAACAAAACCAACGATATACATCTCAAATCATGAACTAGCGAAACAGATCTTGTCGA 364
Query 603 ACAAGTT-TGtttttttttCTAAATCAAAGACAAA-ACCTGAGATCCTT-AAACTTTCTG 659
|||||| |||| | | | || | | || ||| ||| ||| | ||| | ||||| ||
Sbjct 365 GCAAGTTCGGTTTCTCTAT-TATACCGGTGA-AAAGACCCGAGGT-CTTCATACTTTTTG 421
Query 660 GTAATGGACTTAT-CTTCGT-AAATGGTCTTGATTGGGTTCGTCACAGACGAATCTTAAA 717
|||| |||||| | ||| | || ||| |||||||||||| || ||||||||||| ||
Sbjct 422 GTAAAGGACTT-TCCTTTATCCAA-GGTGATGATTGGGTTCGCCATAGACGAATCTTGAA 479
Query 718 CCCTGCATTCTCTATGGACAAACTCAA-GCTCATGACCCAATTGATGGTGGATTGCACTT 776
|||||| ||||| |||||| ||||| || |||||| || ||||| |||||| || |
Sbjct 480 CCCTGCTTTCTCCATGGACCGCCTCAAGGC-CATGACAAAACCGATGGGGGATTGTACCT 538
Query 777 TTAGAATGTTCCTTGAGTGGAAAAAACAGAGGAATGGTGTAGAAACAGAGCAATTTGTGT 836
| || ||||| ||||||| ||||||||| ||||||| || || ||| | ||
Sbjct 539 TGAGGATGTTTGAGGAGTGGAGAAAACAGAGAAATGGTGAAG-TGGTGATCAAGAT-TG- 595
Query 837 TGATTAGCAGAGAGTTTAAGAGATTGACCGCTGATATCATAGCGACGGCTGCGTTTGGAA 896
||| |||| |||||| | | | |||||||||| || |||||||| ||||||||||||
Sbjct 596 AGATAAGCAAAGAGTTCCATAAACTGACCGCTGACATTATAGCGACTACTGCGTTTGGAA 655
Query 897 GCAGTTATGCGGAAGGAATTGAAGTATTTAAATCACA-ATTAGAGCTCCA-AAAGTGTTG 954
| |||||||| |||||||| ||| | | || |||||| | | ||||| | ||| | ||
Sbjct 656 GTAGTTATGCCGAAGGAATCGAATTGTGTAGATCACAGACT-GAGCTTGAGAAA-TATTA 713
Query 955 TGCTG-CTGCTCTTAC-TGACCTCTAT-TTCCCTGGAATC-CAGTACCTTCCTACGCCTT 1010
| || || ||| | | | | ||| | |||| |||| | || |||||||||||||||
Sbjct 714 TAATGCCT-CTC-TCCATAAAGTCT-TCATCCCCGGAA-CTCAATACCTTCCTACGCCTA 769
Query 1011 CGAATCTTCAAA-TATGGAAGCTTGATATGAAAGTGAATAGCTCGATCAAAAGAATCATA 1069
| || ||| ||| ||||| |||| |||| ||||||||| | |||||||||||||||||||
Sbjct 770 CCAACCTT-AAACTATGGGAGCTAGATAAGAAAGTGAAGAACTCGATCAAAAGAATCATA 828
Query 1070 GATGCGAGGTTAACATCGGAATCCAA-A--GAT---TACGGAAACGATCTTCT-GGGAAT 1122
||| | ||| ||| ||| ||| || | || || || |||||||||| ||| |
Sbjct 829 GATTCAAGGCTAAAATCAAAATGTAAGACCTATGGCTATGGGGACGATCTTCTAGGG-GT 887
Query 1123 CATGTT-AACAGCTGCAAGCTCTAACGAGTCTGAGAAAAAGATGAGCATTGATGAGATCA 1181
|||||| || || |||| |||||||||| ||||| ||||||||| || ||||||||||
Sbjct 888 CATGTTGAA-TGCGGCAAAATCTAACGAGTATGAGAGAAAGATGAGAATGGATGAGATCA 946
Query 1182 TAGAAGAATGCAAGACGTTCTTCT-TCGCAGGACACGAAACTACTGCGAAT-CTATTGAC 1239
|||| |||||||||| |||| || | ||||| || | ||||||| || | | ||||||
Sbjct 947 TAGAGGAATGCAAGAATTTCTACTAT-GCAGGGCAAGGAACTACTTCGCTTAC-ATTGAC 1004
Query 1240 ATGGAGTACAATGTTGCTTAGCTTGCACCAAGATTGGCAAGAGAAACTCAGAGAAGAAGT 1299
||||| ||| ||||| || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1005 ATGGACTACGATGTTACTGAGCTTGCACCAAGATTGGCAAGAGAAACTTAGAGAAGAGGT 1064
Query 1300 TTTCAATGAATGCGGTAAAGACAAAATCCCAGATGCAGAGACATGCTCCAAACTAAAACT 1359
|||||||||||| |||||||| || ||||||||| |||| || | |||||||| |||||
Sbjct 1065 TTTCAATGAATGTGGTAAAGATAAGATCCCAGATTCAGACACCTTATCCAAACTCAAACT 1124
Query 1360 GATGAACACGGTGTTTATGGAGTCCCTTCGTCTATACGGACCAGTG-TTAAATCTGCTCC 1418
|||||||| |||||| |||||||| |||||||| || ||||| ||| ||||| || |||
Sbjct 1125 GATGAACATGGTGTTGATGGAGTCGCTTCGTCTGTATGGACCCGTGATTAAAA-TG-TCC 1182
Query 1419 -GATTAG-CATCAGAAGATATGAAATTAGGAAACCTAGAGATCCCTAAAGGCACGA-CTA 1475
|| || || || |||||||||| ||||| || | |||||||| || |||||| | |
Sbjct 1183 CGAG-AGGCAACACAAGATATGAAGGTAGGACACTTGGAGATCCCCAAGGGCACGGGC-A 1240
Query 1476 TAATCCTCCCGATTGC-GAAGATGCACAGAGACAAAGCCGTT-TGGGGA-AGTGACGCCG 1532
| || ||||| || | ||||||||||| ||||| || | | |||||| | ||| | |
Sbjct 1241 TTATTATCCCGTTT-CTGAAGATGCACACCGACAAGGC-GATGTGGGGAGAA-GACACGG 1297
Query 1533 A-CAAATTCAACCC-TATGCGGTTTGCAAACGGTC-TTTCTCGGGCCGCTAATCATCCGA 1589
| ||| |||||||| | |||| || | ||| || | |||||| ||||| | ||| || |
Sbjct 1298 AACAA-TTCAACCCCT-TGCGATTCGTAAATGG-CATTTCTCAAGCCGCCATTCACCCAA 1354
Query 1590 ACGCTCTCCTCGCGTTTTCAATGGGACCAAGAGCTTGCATTGGCCAAAA-CTTTGCGATA 1648
|||||||| | ||||| ||||| ||||||||||||||||||| |||||| |||||| ||
Sbjct 1355 ACGCTCTCATTGCGTTCTCAATCGGACCAAGAGCTTGCATTG-CCAAAAACTTTGCCATG 1413
Query 1649 ATGGAAGCCAAGACCGTTCTCGCCATGATTCTTCAACGGTTCCGGCTCAATCTCTCCGCC 1708
|| |||||||||||||| ||| | ||||| ||||||| ||||||||| | |||||| ||
Sbjct 1414 ATCGAAGCCAAGACCGTGCTCACTATGATCCTTCAACAGTTCCGGCTTAGCCTCTCCCCC 1473
Query 1709 GATTATAAACATGCGCCGGCGGATCACCTCACTCT 1743
|| ||||| || |||| | |||||| ||| |||
Sbjct 1474 GAGTATAAGCACACGCCAGTTGATCACTTCAATCT 1508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79760973030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5