BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46970.1 Length=1526 Score E Sequences producing significant alignments: (Bits) Value Ahg935682 jgi|Araly1|935682|scaffold_403670.1 1927 0.0 > Ahg935682 jgi|Araly1|935682|scaffold_403670.1 Length=1282 Score = 1927 bits (1043), Expect = 0.0 Identities = 1213/1294 (94%), Gaps = 15/1294 (1%) Strand=Plus/Plus Query 129 GCTTTGTTCAGTTTACTTCAATGGAAGCAAAA-CCCTTAGCATCATCATCATCTGAACCA 187 ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||| Sbjct 1 GCTTTGTTCAGTTCACTTCAATGGAAG-AAAAGCCCTTAGCATCATCATCATCTCAACCA 59 Query 188 AACATGATTTCTCCATCATCAAACATTAAACCAAAATTAAAAGATGAAGATTATATGGAG 247 |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| Sbjct 60 AACATGATTTCTCCATCATCAAGCTTTAAACCAAAATTAAAAGATCAAGATTATATGGAG 119 Query 248 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGATTCGAAGACCA-AAGAACAACGGTTC 306 ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| Sbjct 120 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGGGTCGAAGA-CACAAGAACAACGGTTC 178 Query 307 TTTTCAAAAGCAACGTAGGCAATCTCTCCTGGATTTGTATGAGACCGAGTACAGCGAGGG 366 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 179 TTTTCAAAATCAACGTAGGCAATCTCTCTTGGATTTGTATGAGACCGAGTACAGTGAGGG 238 Query 367 TTTCAAGAAAAACATCAAGATTCTTGGAGACACACAAGTTGTTCCGGTGAGTCAGTCTAA 426 |||||||||||||||||||| |||||| || |||||||||||||| |||| | ||||| | Sbjct 239 TTTCAAGAAAAACATCAAGAATCTTGGTGATACACAAGTTGTTCCTGTGAATGAGTCTCA 298 Query 427 GCCACAACAAGATAAAGAAACCAATGAACAAATGAACAACAATAAGAAGAAGCTAAAGTC 486 |||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||| Sbjct 299 GCCACAACAAGATAAAGAAAACAATGAACATATG------AATAAGAAGAAGCTTAAGTC 352 Query 487 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAATGTGTTGAATCATCAAC 546 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 353 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAACGTTTTGAATCATCAAC 412 Query 547 ATTAATTGATGTTTCTGCTAAAGGTCCAAAGAATGTTGAAGTTACTACAGCTCCTCCTGA 606 ||||||||||| | | |||||||||||||||||||||||||||||| | |||||||||| Sbjct 413 ATTAATTGATG-AT-T-CTAAAGGTCCAAAGAATGTTGAAGTTACTAGAACTCCTCCTGA 469 Query 607 TGAGCAATCTGCAGCTGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGAAGTT 666 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 470 TGAGCAATCTGCAGCAGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGATGTT 529 Query 667 TTCTCGAGGAACTTCGAGAGATCTAAGTTGT-TGTTCTTTAAAGAGGAAGTATGGAGATA 725 ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| | Sbjct 530 TTCTCGAGGAACTTCGAGAGATCTAAGTT-TATGTTCTTTAAAGAGGAAGCATGGAGACA 588 Query 726 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCAGATGATGAATCAGATGATGCGA 785 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 589 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCCGATGATGAATCAGATGATGCGA 648 Query 786 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAAAGAAAACGAAGCACAGAAG 845 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 649 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAGAGAAAACGAAGCACAGAAG 708 Query 846 TCCATAAGTTATATGAAAGAAAACGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 905 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 709 TATATAAGTTATATGAAAGAAAGCGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 768 Query 906 AGGACCTACTACCAAATTGTTACAAGGATGATAAGGCTTCATTGTTGGATGAGGCTATCA 965 ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 769 AGGACATACTACCAAACTGTTACAAGGATGATAAGGCATCATTGTTGGATGAGGCTATCA 828 Query 966 AATATATGCGGACCCTTCAACTTCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAA 1025 |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 829 AATATATGAGGACCCTTCAACATCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAC 888 Query 1026 GACCACCTACGATGTTGCCAATGGGTCATTACTCTCCCATGGGTCTAGGAATGCATATGG 1085 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 889 GACCACCTATGATGTTGCCAATGGGTCATTACCCTCCCATGGGTCTAGGAATGCATGTGG 948 Query 1086 GTGCAGCAGCAACACCAACATCAATACCGCAATTCCTGCCTATGAATGTTCAAGCAACCG 1145 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| Sbjct 949 GTGCAGCAGCAACACCAACATCAGTACCGCAATTCCTACCTATGAATGTTCAAGGAACCA 1008 Query 1146 GTTTTCCGGGGATGAACAATGCACCACCACAAATGCTAAGCTTTCTTAATCACCCAAGTG 1205 ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||| | | Sbjct 1009 GTTTTCCCGGGATTAACAATGCATCATCACAAATGCTAAGCTTTCTTAATCACCCCACAG 1068 Query 1206 GACTAATTCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCCATTCGTGG 1265 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1069 GACTAATCCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCAATTCGTGG 1128 Query 1266 TGCCTTCGTGTGTTTCTCAGACTCAGGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1325 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1129 TGCCTTCGTGTGTTCCTCAGACTCATGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1188 Query 1326 CCGCCTCAAACTTAGAAGATGCAATGCAATATAGAGGAAGCAACGGTTTTAGTTATTATC 1385 || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1189 CCACCTCAAACTTAGAAGATGCAATGCAGTATAGAGGAAGCAACGGTTATAGTTATTATC 1248 Query 1386 GCTCGCCAAACTAATGATTTGTAGAAAGTTGATG 1419 ||||| ||||||| ||||||||| |||||||| Sbjct 1249 CCTCGCAAAACTAAAGATTTGTAGGTAGTTGATG 1282 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57135367500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5