BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47130.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483888 jgi|Araly1|483888|fgenesh2_kg.4__2948__AT2G47130.1 1360 0.0
Ahg902768 jgi|Araly1|902768|Al_scaffold_0004_3418 359 2e-98
Ahg483890 jgi|Araly1|483890|fgenesh2_kg.4__2950__AT2G47150.1 246 2e-64
> Ahg483888 jgi|Araly1|483888|fgenesh2_kg.4__2948__AT2G47130.1
Length=883
Score = 1360 bits (736), Expect = 0.0
Identities = 839/888 (94%), Gaps = 9/888 (1%)
Strand=Plus/Plus
Query 28 TCTCTCTGTCTAC-TTTTGAAATCCTTCAAAAATGTCGGGACTCAGATTGGATGGCAAAA 86
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTGTCT-CTTTTTGAAATCCTTCAAAAATGTCGGGACTCAGATTGGATGGCAAAA 59
Query 87 TCGCAATAATAACAGGCGGAGCTAGCGGGATTGGAGCCGAAGCGGTTAGGCTGTTCACGG 146
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCGCAATTATAACAGGCGGAGCTAGCGGGATTGGAGCCGAAGCGGTTAGGCTGTTCACGG 119
Query 147 ACCACGGAGCTAAGGTGGTCATCGTTGACTTTCAAGAAGAACTTGGTCAAAACGTTGCCG 206
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 120 ACCACGGAGCTAAGGTGGTCATCGTTGACTTACAAGAAGAGCTTGGTCAAAACGTCGCCG 179
Query 207 TTTCTGTCGGGAAAGACAAAGCAAGTTTTTACCGTTGCGATGTTACAAACGAAAAGGAGG 266
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 180 TTTCTGTCGGGAAAGACAAAGCATGTTTTTACCGTTGCGATGTTACAAACGAAACGGAGG 239
Query 267 TAGAAAACGCCGTTAAGTTCACCGTCGAAAAGTACGGGAAGCTTGACGTTCTCTTTAGTA 326
|||| |||||||||||||||||||||||||| |||| ||||| |||||||| |||||||
Sbjct 240 TAGAGAACGCCGTTAAGTTCACCGTCGAAAAATACGAAAAGCTAGACGTTCTGTTTAGTA 299
Query 327 ACGCCGGCGTTATGGAACAGCCGGGAAGCTTTCTCGACTTGAATCTGGAACAGTTTGACC 386
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 ACGCCGGCGTTATGGAACAGCCGGGAAGCTTTCTCGACTTGAATCTTGAACAGTTTGACC 359
Query 387 GAACCATGGCGGTCAACGTTCGTGGTGCGGCTGCGTTTATCAAACACGCTGCACGAGCCA 446
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 360 GAACCATGGCGGTCAACGTTCGTGGTGCAGCTGCGTTTATCAAACACGCGGCACGAGCCA 419
Query 447 TGGTGGAGAAAGGCACGCGTGGGTCAATCGTATGTACGACCAGCGTCGCGTCGGAGATCG 506
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 420 TGGTAGAGAAAGGCACGCGTGGGTCAATTGTATGTACGACCAGCGTCGCATCGGAGATCG 479
Query 507 GTGGTCCAGGACCTCACGCGTACACGGCGTCTAAGCACGCTCTTCTCGGGCTGGTTAAAT 566
||||||| || |||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 480 GTGGTCCGGGTCCTCACGCGTACACTGCGTCTAAGCACGCTCTTCTGGGGCTGATTAAAT 539
Query 567 CGGCTTGTGGCGGGCTAGGGAAGTACGGGATTAGAGTCAACGGCGTTGCACCATACGCGG 626
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 CGGCTTGTGGCGGGTTGGGGAAGTACGGGATTAGAGTCAACGGCGTTGCACCGTACGCGG 599
Query 627 TGGCGACGGCGATAAATAGCCGTGACGAGGAAACGGTGAGGATGGTGGAGGAATATAGCG 686
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 TGGCGACGGCGATAAATAGCCGTGACGAGGAAACGATGAGGATGGTGGAGGAATATAGCA 659
Query 687 CAGCCACGGGGATTCTCAAAGGTGTGGTGCTTAAGGCTCGCCATGTGGCAGAGGCGGCTT 746
| ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 660 CCGCCACTGGGATTCTCAAGGGCGTGGTGCTTAAGGCTCGCCATGTGGCTGAGGCGGCTT 719
Query 747 TGTTTCTGGCTTCGGATGATTCGGCTTACGTTAGCGGTCAGAATCTGGCTGTTGACGGGG 806
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 720 TGTTTCTGGCTTCGGATGATTCGGCTTACGTTAGCGGCCAGAATCTGGCTGTTGACGGTG 779
Query 807 GTTATAGCGTCGTTAAGCCCATTTGAA-GGAGAGAATATTCTATAAATCAACACTTATTA 865
|||||| ||||||||||||||| |||| ||| | |||||||||||||||| ||||| |||
Sbjct 780 GTTATACCGTCGTTAAGCCCATGTGAAAGGAAAAAATATTCTATAAATCAGCACTT-TTA 838
Query 866 ACGCCTTAA-TATTTTACTTTCAACGAGCTTTT-CACGCCATTATCtt 911
||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 839 --GCCTTAACTATTTTACTTTCAACGA-CTTTTACACGCCATTATCTT 883
> Ahg902768 jgi|Araly1|902768|Al_scaffold_0004_3418
Length=774
Score = 359 bits (194), Expect = 2e-98
Identities = 589/776 (76%), Gaps = 41/776 (5%)
Strand=Plus/Plus
Query 71 AGATTGGATGGCAAAATCGCAATAATAACAGGCGGAGCTAGCGGGATTGGAGCCGAAG-C 129
||||||||||||||||||| ||| || || |||||||| ||||| ||||| || | || |
Sbjct 13 AGATTGGATGGCAAAATCGTAATTATTACTGGCGGAGCAAGCGGCATTGGGGCTG-AGTC 71
Query 130 GGTTAGGCTGTTCACGGACCACGGAGCTAAG-GTGGTCATCGTTGACTTTCAAGAAGAAC 188
||| || | || || || ||||| ||| | || || ||||||||| | ||||| || |
Sbjct 72 CGTTCGGTTATTTACCGAACACGGCGCT-CGAGTCGTGATCGTTGACGTACAAGACGAGC 130
Query 189 TTGGTCAAAACGTTGCCGTTTCTGTCGG-GAAAGACAAAGCAAGTTTTTACCGTTGCGAT 247
|||||||||||||||||||||||||||| ||| |||||||| |||| |||| |||||||
Sbjct 131 TTGGTCAAAACGTTGCCGTTTCTGTCGGTGAA-GACAAAGCCAGTTACTACCATTGCGAT 189
Query 248 GTTACAAACGAAAAGGAGGT-AGAAAACGCCGTTAAGTTCACCGTCGAAAAGTACGGGAA 306
|| || ||||| | ||| || | |||||||||||||||| ||||| ||||| | |||||
Sbjct 190 GTCACGAACGAGACGGAAGTTA-AAAACGCCGTTAAGTTTACCGTAGAAAAACATGGGAA 248
Query 307 GCTTGACGTTCTCTTTAGTAACGCCGGCGTTATGGAACAGCCGG-GAAGCTTTCTCGACT 365
|||||||||||| |||||||||||||||||||| || | | | || || | ||||| |
Sbjct 249 GCTTGACGTTCTGTTTAGTAACGCCGGCGTTATAGAGCCGTTTGTGA-GCATCCTCGATT 307
Query 366 TGAATCTGGAAC-AGTTTGACCGAACCATGGCGGTCAACGTTCGTGGTGCGGCTGCGTTT 424
| ||||| ||| |||| |||||||| | || || ||| | || ||||| ||||| ||
Sbjct 308 TAAATCTC-AACGAGTTAGACCGAACTGTCGCCGTTAACATCCGCGGTGCAGCTGCATTC 366
Query 425 ATCAAACACGCTGCACGAGCCATGGTGGAGAAAGGCACGCGTGGGTCAATCGTATGTACG 484
||||| || || ||||| |||||||||||||||||||| || || || ||| | || ||
Sbjct 367 ATCAAGCATGCGGCACGTGCCATGGTGGAGAAAGGCACCCGCGGCTCCATCATTTGCACC 426
Query 485 ACCAGCGTCGCGTCGGAGATCGGTGGTC-CAGG-ACCTCACGCGTACACGGCGTCTAAGC 542
|| ||||||||| | |||||| || | | || ||| |||| |||||||||||| ||||
Sbjct 427 ACTAGCGTCGCGGCTGAGATCTCCGG-CAC-GGCACCACACGGGTACACGGCGTCGAAGC 484
Query 543 ACGCTCT-TCTCGGGCTGGTT-AAATCGGCTTGTGGCGGGCTAGGGAAGTACGGGATTAG 600
| | || | | ||| | | | |||||||||| ||| || |||| || || ||||| ||
Sbjct 485 ATGGGCTGT-T-GGGTTTGATCAAATCGGCTTCTGGTGGATTAGGAAAATATGGGATAAG 542
Query 601 AGTCAACGGCGTTGCACCATACGCG-GTGGCGACGGCGATAAATAGCCGTGACGAGGAA- 658
||| ||||||||||| || | | | || || || || || | | || ||
Sbjct 543 AGTAAACGGCGTTGCTCCGTTTG-GTGTCGCAACACCGTTAGTTTGTAATGGTTTC-AAG 600
Query 659 ACGGTG--AG--GATGGTGGAGGA-ATATAGCG-CAGCCACGGGGATTCTCAAAGGTG-- 710
| || | | | |||||||||| | | | || |||| | | || ||| ||||| |
Sbjct 601 ATGGAGCCAAACG-TGGTGGAGGAGA-ACA-CGTCAGCGTCAGCGAATCT-AAAGG-GCA 655
Query 711 TGGTGCTT-AAGGCTCGCCATGTGGCAGAGGCGGCTTTGTTTCTGGCTTCGGATGATTCG 769
| || || || ||||| || |||||||| || ||| | ||| | || || ||||| |||
Sbjct 656 TTGTA-TTGAAAGCTCGTCACGTGGCAGAAGCTGCTCTCTTTTTAGCATCCGATGAGTCG 714
Query 770 GCTTACGTTAGCGGTCAGAATCTGGCTGTTGACGGGGGTTA-TAGCGTCGTTAAGC 824
|||||||||||||| ||||| ||||| |||||||| ||||| | | || |||||||
Sbjct 715 GCTTACGTTAGCGGACAGAACCTGGCCGTTGACGGAGGTTACTCG-GTGGTTAAGC 769
> Ahg483890 jgi|Araly1|483890|fgenesh2_kg.4__2950__AT2G47150.1
Length=492
Score = 246 bits (133), Expect = 2e-64
Identities = 193/221 (87%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 326 AACGCCGGCGT-TATGG-AACAGCCGGGAAGCTTTCTCGACTTGAATCTGGAACAGTTTG 383
||| ||||||| | ||| ||| |||||||||| | || || |||||||| |||| |||||
Sbjct 215 AAC-CCGGCGTCT-TGGAAAC-GCCGGGAAGCATCCTTGATTTGAATCTTGAACGGTTTG 271
Query 384 ACCGAACCATGGCGGTCAACGTTCGTGGTGCGGCTGCGTTTATCAAACACGCTGCACGAG 443
||||||| |||||||||||||||||||| ||||||| |||||||||||| || |||||||
Sbjct 272 ACCGAACAATGGCGGTCAACGTTCGTGGAGCGGCTGTGTTTATCAAACATGCGGCACGAG 331
Query 444 CCATGGTGGAGAAAGGCACGCGTGGGTCAATCGTATGTACGACCAGCGTCGCGTCGGAGA 503
||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 332 CCATGGTGGAGAAAGGCACGCGTGGCTCCATCGTTTGTACGACCAGCGTTACGTCGGAGA 391
Query 504 TCGGTGGTCCAGG-ACCTCACGCGTACACGGCGTCTAAGCA 543
||||||||| ||| |||||| | |||||| |||| |||||
Sbjct 392 TCGGTGGTC-AGGGACCTCATGAATACACGACGTCGAAGCA 431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5