BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47180.1 Length=1355 Score E Sequences producing significant alignments: (Bits) Value Ahg483894 jgi|Araly1|483894|fgenesh2_kg.4__2954__AT2G47180.1 1703 0.0 > Ahg483894 jgi|Araly1|483894|fgenesh2_kg.4__2954__AT2G47180.1 Length=1175 Score = 1703 bits (922), Expect = 0.0 Identities = 1049/1111 (94%), Gaps = 6/1111 (1%) Strand=Plus/Plus Query 1 CTCATCAGCAAACACAAACACACGACTAGATAAACTCTAAATCCTCACAGC-AGATCACG 59 ||||||||||||||||| |||| |||||||||||||||||||||| |||| | |||||| Sbjct 1 CTCATCAGCAAACACAAGCACATAACTAGATAAACTCTAAATCCTCTCAGCTA-ATCACG 59 Query 60 TGCTAATCACATGGCTCCGGGGCTTACTCAAACCGCTGATGCT-ATGTCCACCGTGACGA 118 ||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||| Sbjct 60 TGCTAATCACATGGCTCCGGGGCTTACTCCAACCGCCGATGCTGA-ATCCACCGTGACGA 118 Query 119 TAACAAAACCGTCACTGCCATCAGTCCAAGACAGCGATCGAGCTTACGTGACGTTTCTTG 178 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TAACAAAACCGTTACTACCATCAGTCCAAGACAGCGATCGAGCTTACGTGACGTTTCTTG 178 Query 179 CTGGAAACGGTGATTACGTGAAAGGAGTCGTTGGTTTAGCCAAAGGGTTAAGGAAAGTCA 238 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 179 CCGGAAACGGTGATTACGTGAAAGGAGTCGTTGGTTTAGCCAAAGGTTTAAGGAAAGTCA 238 Query 239 AATCGGCTTATCCACTCGTAGTAGCGATGTTACCCGACGTCCCGGAGGAACACCGTCGTA 298 ||||||||||||||||||| || ||||| ||||| ||||| |||||||| || ||||||| Sbjct 239 AATCGGCTTATCCACTCGTTGTGGCGATATTACCGGACGTGCCGGAGGAGCATCGTCGTA 298 Query 299 TACTTGTGGATCAAGGATGCATCGTCCGTGAAATCGAACCCGTTTACCCACCCGAGAACC 358 |||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||| Sbjct 299 TACTTGTGGAACAAGGATGCATTGTTCGTGAAATTGAACCCGTTTACCCACCCGAGAACC 358 Query 359 AAACTCAGTTCGCCATGGCTTATTACGTCATCAACTACTCTAAACTCCGTATCTGGAAGT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AAACTCAGTTCGCCATGGCTTATTACGTCATCAACTACTCTAAACTCCGTATCTGGAAGT 418 Query 419 TTGTGGAGTATAGTAAAATGATATATTTAGATGGAGACATTCAAGTTTACGAAAACATCG 478 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 419 TTGTGGAGTATAGTAAAATGATTTATTTGGATGGAGACATTCAAGTTTACGAAAACATCG 478 Query 479 ATCACTTGTTTGACCTACCAGATGGCTATTTGTACGCGGTGATGGATTGTTTCTGTGAGA 538 ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |||| Sbjct 479 ATCACTTGTTTGATCTACCATATGGCTATTTCTACGCGGTGATGGATTGTTTCTGCGAGA 538 Query 539 AAACATGGAGTCACACGCCGCAATACAAGATCAGATATTGCCAACAATGCCCCGACAAAG 598 |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 539 AAACATGGAGCCACACGCCGCAATACAAGATCGGATATTGCCAACAATGCCGCGACAAAG 598 Query 599 TCCAGTGGCCAAAAGCGGAGCTTGGAGAGCCACCGGCTCTTTACTTCAACGCCGGAATGT 658 ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 599 TCCAGTGGCCAAAGGCGGAGCTTGGAGAGCCGCCAGCTCTTTACTTCAACGCCGGAATGT 658 Query 659 TCTTGTACGAGCCTAACCTCGAGACTTACGAGGATCTACTACGAACACTTAAAATCACTC 718 |||||| |||||| |||||||||||||||||||| ||| || |||| ||||||||||||| Sbjct 659 TCTTGTTCGAGCCAAACCTCGAGACTTACGAGGACCTATTAAGAACCCTTAAAATCACTC 718 Query 719 CTCCGACTCCTTTCGCTGAACAGGATTTTTTGAACATGTACTTTAAGAAAATCTACAAGC 778 ||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||| Sbjct 719 CTCCGACCCCTTTCGCTGAACAGGATTTTCTAAACATGTACTTCAAGAAAATCTACAAGC 778 Query 779 CGATTCCTTTAGTGTACAATCTCGTCCTTGCGATGTTATGGCGTCACCCAGAAAATGTAG 838 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 779 CGATTCCTTTAGTGTACAATCTCGTCCTTGCGATGTTATGGCGTCATCCAGAAAATGTAG 838 Query 839 AGCTTGGAAAAGTCAAGGTGGTTCACTACTGTGCAGCGGGTTCGAAGCCGTGGAGATACA 898 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AGCTTGGAAAAGTCAACGTGGTTCACTACTGTGCAGCGGGTTCGAAGCCGTGGAGATACA 898 Query 899 CAGGGAAAGAAGCGAACATGGAGAGGGAAGATATAAAAATGTTAGTGAAAAAATGGTGGG 958 |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| Sbjct 899 CAGGGAAAGAAGCGAACATGGACAGGGAAGACATAAAAATGTTAGTGAAGAAATGGTGGG 958 Query 959 ACATTTACGACGACGAATCCTTGGATTACAAGAAACCTGTTA-CCGTTGTGGACACAGAG 1017 |||||||| |||| |||||||||||||||||||||||||| | ||||||||| ||||||| Sbjct 959 ACATTTACAACGATGAATCCTTGGATTACAAGAAACCTGT-AGCCGTTGTGGGCACAGAG 1017 Query 1018 GTCGATCTCGTGAATCTGAAGCCGTTCATCACCGCTCTTACTGAAGCTGGCCGGCTCAAC 1077 | ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| Sbjct 1018 GCCGATCTCGTGAATCTGAAGCCCTTTATCACCGCTCTTACTGAAGCTGGCCGGGTCAAC 1077 Query 1078 TACGTGACCGCACCGTCCGCTGCTTGAATGT 1108 ||||||||||||||||||||||||||||||| Sbjct 1078 TACGTGACCGCACCGTCCGCTGCTTGAATGT 1108 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50703479610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5