BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47270.1 Length=592 Score E Sequences producing significant alignments: (Bits) Value Ahg497392 jgi|Araly1|497392|fgenesh2_kg.302__1__AT2G47270.1 702 0.0 Ahg483904 jgi|Araly1|483904|fgenesh2_kg.4__2964__AT2G47270.1 665 0.0 > Ahg497392 jgi|Araly1|497392|fgenesh2_kg.302__1__AT2G47270.1 Length=488 Score = 702 bits (380), Expect = 0.0 Identities = 458/493 (93%), Gaps = 16/493 (3%) Strand=Plus/Plus Query 59 GTTATCACTTGTCTACACAACATTCTTTCATTTACAATAATAATATGGGTGT---AACAT 115 ||||||||||||||| ||||||||||||| ||||| ||||||||||| || ||||| Sbjct 1 GTTATCACTTGTCTATACAACATTCTTTCGTTTAC---AATAATATGGGAGTAACAACAT 57 Query 116 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGAAGACAAAGGGCTCGAAGGG 175 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 58 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGACGACAAAGGGCTCGAAGGG 117 Query 176 CACTTGTGAAGAAGATCATGATCCGACCAAGGAAGAGTGTAGAAGCTTCTAGAAGACCTT 235 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 118 CACTTGTGAAGAAGATCATGATCCGACCGAGGAAGAGTCTAGAAGCTTCTAGAAGACCTT 177 Query 236 GTCGCGCAATACACAGACGAGTGAAGACGCTAAAAGAGCTTGTTCCCAACACCAAAACAT 295 | ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 178 GCCGCGCAATACACAGAAGAGTCAAGACGCTGAAAGAGCTTGTTCCCAACACCAAAACAT 237 Query 296 CAGAAGGTTTAGATGGACTCTTTAGACAAACGGCAGATTATATCTTGGCTTTGGAAATGA 355 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 238 CAGAAGGTTTGGATGGACTCTTTAGACAAACGGCAGATTATATTTTGGCTTTGGAAATGA 297 Query 356 AAGTGAAAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAAGC 415 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 298 AAGTGAGAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAATC 357 Query 416 CTTCAtatattttttgtatatctt--------gttggattttacgttctttttagttttt 467 |||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 358 CTTCATATATTTTTTGTATATCTTAATTAATTGTTGGATTTTACGTG-TTTTTAGTTTTT 416 Query 468 atttgttcgtgtttattttttattatCTCGTGTGATTGTCTTGTGTTGCTTATATAGAAA 527 ||||||| ||||||||||| ||||||||||||||| |||| ||||||||| ||||||||| Sbjct 417 ATTTGTTTGTGTTTATTTTCTATTATCTCGTGTGACTGTCGTGTGTTGCT-ATATAGAAA 475 Query 528 AGGAATTTGGTTT 540 ||||||||||||| Sbjct 476 AGGAATTTGGTTT 488 > Ahg483904 jgi|Araly1|483904|fgenesh2_kg.4__2964__AT2G47270.1 Length=466 Score = 665 bits (360), Expect = 0.0 Identities = 436/470 (93%), Gaps = 15/470 (3%) Strand=Plus/Plus Query 59 GTTATCACTTGTCTACACAACATTCTTTCATTTACAATAATAATATGGGTGT---AACAT 115 ||||||||||||||| ||||||||||||| ||||| ||||||||||| || ||||| Sbjct 1 GTTATCACTTGTCTATACAACATTCTTTCGTTTAC---AATAATATGGGAGTAACAACAT 57 Query 116 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGAAGACAAAGGGCTCGAAGGG 175 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 58 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGACGACAAAGGGCTCGAAGGG 117 Query 176 CACTTGTGAAGAAGATCATGATCCGACCAAGGAAGAGTGTAGAAGCTTCTAGAAGACCTT 235 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 118 CACTTGTGAAGAAGATCATGATCCGACCGAGGAAGAGTCTAGAAGCTTCTAGAAGACCTT 177 Query 236 GTCGCGCAATACACAGACGAGTGAAGACGCTAAAAGAGCTTGTTCCCAACACCAAAACAT 295 | ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 178 GCCGCGCAATACACAGAAGAGTCAAGACGCTGAAAGAGCTTGTTCCCAACACCAAAACAT 237 Query 296 CAGAAGGTTTAGATGGACTCTTTAGACAAACGGCAGATTATATCTTGGCTTTGGAAATGA 355 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 238 CAGAAGGTTTGGATGGACTCTTTAGACAAACGGCAGATTATATTTTGGCTTTGGAAATGA 297 Query 356 AAGTGAAAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAAGC 415 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 298 AAGTGAGAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAATC 357 Query 416 CTTCAtatattttttgtatatctt--------gttggattttacgttctttttagttttt 467 |||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 358 CTTCATATATTTTTTGTATATCTTAATTAATTGTTGGATTTTACGTG-TTTTTAGTTTTT 416 Query 468 atttgttcgtgtttattttttattatCTCGTGTGATTGTCTTGTGTTGCT 517 ||||||| ||||||||||| ||||||||||||||| |||| ||||||||| Sbjct 417 ATTTGTTTGTGTTTATTTTCTATTATCTCGTGTGACTGTCGTGTGTTGCT 466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21672374552 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5