BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47320.1 Length=844 Score E Sequences producing significant alignments: (Bits) Value Ahg935720 jgi|Araly1|935720|scaffold_403708.1 1197 0.0 Ahg483908 jgi|Araly1|483908|fgenesh2_kg.4__2968__AT2G47330.1 62.1 6e-09 > Ahg935720 jgi|Araly1|935720|scaffold_403708.1 Length=733 Score = 1197 bits (648), Expect = 0.0 Identities = 698/722 (97%), Gaps = 3/722 (0%) Strand=Plus/Plus Query 52 TAAGTAATGGCGAAGATCAAACCTCAAGCATTGTTGCAGCAAAGCAAGAAGAAGAAAGGA 111 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 15 TAACTAATGGCGAAGATCAAACCTCAAGCATTATTGCAGCAAAGCAAGAAGAAGAAAGGA 74 Query 112 CCGTCTCGGATAAGCATAACCAACATCGTCATTTACACTTTGGCTGTGCTTTTGCTTGTC 171 ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 75 CCGTCTCGGATAAGCATAACCAACATCGTCATTTACACTTTGGCTCTTCTATTGCTTGTC 134 Query 172 TTTGTTCTCTTCTCTGCTTACAGACGTTGGACTCACAGATCTGAGATCCCAACGCACAAT 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 TTTGTTCTCTTCTCTGCTTACAGACGTTGGACTCACAGATCTGAGATCCCAACGCACAAT 194 Query 232 GGTAGATCAGTTCTTGAGGATGCAGCCTTCCCTGGAATGAAGAATGTTGATCTTCCGCGG 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 GGTAGATCAGTTCTTGAGGATGCAGCCTTCCCTGGAATGAAGAATGTTGATCTTCCGCGG 254 Query 292 TTTGCTACCTTAGATACGGGCAAAGGTTCAGTGACCATTGAACTCTTCAAGGATACTGCT 351 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 255 TTTGCTGCCTTAGATACGGGCAAAGGTTCAGTGACCATTGAACTGTTCAAGGATACTGCT 314 Query 352 CCCAATGTGGTTGACCAGTTCATGAAATTCTGTCAAGATGGGTATTTCAAAGGTTTCTTA 411 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 315 CCCAATGTGGTTGACCAGTTCATGAAATTGTGTCAAGACGGGTATTTCAAAGGTTTCTTA 374 Query 412 TTCAGTCGAGTTGTAAAGCATTTTGTGATTCAAGCCGGTGACTCTGCGGAGTTCGATGCT 471 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 375 TTCAGTCGAGTTGTAAAGCATTTTGTGATTCAAGCGGGTGACTCTGCAGAGTTCGATGCT 434 Query 472 GTCAAAGATTGGGCACTCGACAGAAAGAACATTGATACCAGTTTGAAACATGAAGAATTC 531 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 435 GTCAAAGATTGGGCACTCGAAAGAAAGAACATTGATACCAGTTTAAAACATGAAGAGTTC 494 Query 532 ATGGTGGGAACTCCTAAAGCTAAAAACGAGCAAGGAGGATTCGAGTTCTTCATTGTGTCT 591 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 495 ATGGTGGGAACTCCTAAAGCTAAAAACGAGCTAGGAGGATTCGAGTTCTTCATTGTATCT 554 Query 592 GCTCAGATCAAAGATCTGAACGAGAAATTGACTGTCTTTGGTCGAGTTTCTAAAGGACAA 651 ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 555 TCTCAGATCAAAGATCTGAACGAGAAATTGACAGTCTTTGGTCGAGTTTCTAAGGGACAA 614 Query 652 GACGTTGTTCAGGAGATCGAAGAGGTTGAGACAGATGATCAGTATCAACCAAAGTCGCCA 711 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 615 GACGTCGTTCAGGAGATCGAAGAGGTAGAGACAGATGATCAGTATCAACCAAAGTCGCCA 674 Query 712 ATAGAGATCATGTCCGTCACTTTGCTTCAAGACATGTAAAAGCTTTTTTACTTCTTGTCT 771 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 675 ATAGAGATCATGTCCGTCACTTTGCTTCAAGACATGTAAAAGCTTT---ACTTCTTGTCT 731 Query 772 CT 773 || Sbjct 732 CT 733 > Ahg483908 jgi|Araly1|483908|fgenesh2_kg.4__2968__AT2G47330.1 Length=2501 Score = 62.1 bits (33), Expect = 6e-09 Identities = 35/36 (97%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 809 AATTTGAAACCCTTTTTATCATCTATTTTCCATATC 844 |||||||||||||||||||||||||||||||| ||| Sbjct 2501 AATTTGAAACCCTTTTTATCATCTATTTTCCACATC 2466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31222669023 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5