BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47370.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322382 jgi|Araly1|322382|fgenesh1_pm.C_scaffold_4002439 1598 0.0
Ahg480560 jgi|Araly1|480560|fgenesh2_kg.3__3261__AT2G16760.1 1046 0.0
> Ahg322382 jgi|Araly1|322382|fgenesh1_pm.C_scaffold_4002439
Length=996
Score = 1598 bits (865), Expect = 0.0
Identities = 954/997 (96%), Gaps = 5/997 (1%)
Strand=Plus/Plus
Query 65 ATGTCGCCGTCCTGCTGCTCCGGCAAATACTCCGTCGCTCTCTTCTTCTTCATTCTCTCC 124
||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCGCCGTCGTGCTGCTCCGGCAAATGCTCCGTCGCTCTCTTCTTCCTCATTCTCTCC 60
Query 125 GCCGTTCCAATAGCTTATATTATCT-CTTCAGAGAAAGCTGTTCCTTCCACGCACGTCAT 183
||||||||||| |||||| |||||| ||| |||| ||||||||||||||||||||||||
Sbjct 61 GCCGTTCCAATTGCTTATCTTATCTCCTT-AGAGCGAGCTGTTCCTTCCACGCACGTCAT 119
Query 184 CTCTTACCACAGCTCCGGCTTCCTCCGCGAGTGCGCCAAATGGGACGACGTTGGTCGGAG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCTTACCACAGCTCCGGCTTCCTCCGCGAGTGCGCCAAATGGGACGACGTTGGTCGGAG 179
Query 244 ATTCCTCGTTTCCTACATGGACGGCGGCGGCGGTATCGGCGAGCTTGTTCCTACTAAAGA 303
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 180 ATTCCTCGTTTCCTACATGGACGGCGGCGGCGGTATCGGCGAGCTTTTTCCTACTAAATA 239
Query 304 TTCCGACGACGTTCTTAAGGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGTAACTC 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCCGACGACGTTCTTGAGGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGTAACTC 299
Query 364 TTCCAACGGATTTGTCATCGACCGCCACCGAAACCGTCTCCTCCTCGCTGTCGGCGATTT 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCCAACGGATTCGTCATCGACCGCCACCGAAACCGTCTCCTCCTCGCTGTCGGCGATTT 359
Query 424 GCTTGGAAATCGTTATAGTGCTTTAGTGGCCTATGATTTGTCCACGTGGCGTCGTCTCTT 483
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATTGGAAATCGCTACAGTGCTTTAGTGGCCTATGATTTGTCCACGTGGCGTCGTCTCTT 419
Query 484 CCTCACAGTGCTTAGCAGCCATAGTAAAGAGATAACATACGCAGACGATGTAGCTGTTGA 543
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 420 CCTCACAGTGCTTAGCAGCCATAGTAAAGAGATATCATATGCAGACGACGTAGCTGTTGA 479
Query 544 TACACAAGGAAATGCTTATGTATCTGATGCAAAAGGAGGTAAAATATGGGTTGTTGATGT 603
| ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TGCACAAGGCAGTGCTTATGTATCTGATGCAAAAGGAGGTAAAATATGGATTGTTGATGT 539
Query 604 CAATGGAAAGCTAGTGTACACCATTAGAAGCCCTCTCTTCACTACACCTGGTTGGTATAA 663
||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 540 GAATGGAAAGCTTGTGTACACCATTAGAAGCCCTCTCTTCACTCCACCTCGTTGGTATAA 599
Query 664 TAACTTTGTCTCTCTTAACGGCATTGTTTATCACCCGGAGGGGTTCCTTATCGTCATCCA 723
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 600 TAACTTTGTCTCTCTTAACGGCATTGTTTATCACCCGGACGGATTCCTTATCGTCATCCA 659
Query 724 CACTTTCTCCGGTTTCTTATACAAAATCGATGTAACCAATGGGGATGTTAGTAGTAAAGT 783
|||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||
Sbjct 660 CACTTTCTCCGGTTTCTTATTCAAAATCGATGTTACCAATGGGGATATTAGTAGTAAAGT 719
Query 784 CACTGTTATTGACGTTTCTGGTGGGTCTTTGAGGTTTGGTGATGGGCTTGAGTTCTT--- 840
|||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 CACTCTCATTGACGTTTCTGGTGGCTCTTTGAGGTTTGGTGATGGGCTTGAGTTCTTCTT 779
Query 841 GTCTCCAACCAAGATTGTTGTTGCAGGTAGCCCGTCTTCGAAACTGGTAGAGAGTTCAGA 900
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 GTCTCCCACCAAGATTGTTGTTGCAGGTAGCCCGTCTTCGAAACTGGTGGAGAGTTCAGA 839
Query 901 CGGGTGGCGGACGGCTTCTGTGACGGGTTGGTTCAGCAGCGGTATGGTTCATCGGTTAGT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGGGTGGCGGACGGCTTCTGTGACGGGTTGGTTCAGCAGCGGTATGGTTCATCGGTTAGT 899
Query 961 CTCGTCGGCTACTGTTAAAGAAGGAAGAGTTTATCTTAATCACATTGTTGGGTTTGGGTC 1020
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 CTCGTCGGCCACTGTTAAAGAAGGAAGAGTTTATCTTAACCACATTGTTGGGTTTGGGTC 959
Query 1021 TAAGAAGAGACACATACTTGTGGAAGCTGTGTTTTAG 1057
||||||||||||||||||||| |||||||||||||||
Sbjct 960 TAAGAAGAGACACATACTTGTAGAAGCTGTGTTTTAG 996
> Ahg480560 jgi|Araly1|480560|fgenesh2_kg.3__3261__AT2G16760.1
Length=1107
Score = 1046 bits (566), Expect = 0.0
Identities = 923/1091 (85%), Gaps = 42/1091 (4%)
Strand=Plus/Plus
Query 62 AAAATGTCGCCGTCCTGCTGCTCCGGCAAATACTCCGTC-GCTCTCTTCTTCTTCATTCT 120
|||||||| ||||| | |||||||||| || ||||| | ||||||||| | || | |
Sbjct 36 AAAATGTCCCCGTCGTTTTGCTCCGGCAGATGCTCCG-CTGCTCTCTTC--C-TCGTAAT 91
Query 121 CTCCGCCGTTCCAATAGCTTATATTATCT-CTTCAGAGAAAGCTGTTCCTTCCACGCACG 179
||||||||||||||||||||| | |||| ||| |||| ||| |||||||| || ||||
Sbjct 92 CTCCGCCGTTCCAATAGCTTACCTCATCTCCTT-AGAGCTAGCCGTTCCTTCTACACACG 150
Query 180 TCATCTCTTACCACAGCTCCGGCTTCCTCCGCGAGTGCGCCAAATGGGACGACGTTGGTC 239
|| |||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 151 TCTTCTCTTACCAAAGCTCTGGCTTCTTCCGCGAGTGCGCCAAATGGGACGATGTTGGTC 210
Query 240 GGAGATTCCTCGTTTCCTACATGGACGGCGGCGGCGGTATCGGCGAGCTTGTTCCTACTA 299
||||||||||||| |||| ||||||||| ||||| | |||||||| ||||| | |||
Sbjct 211 GGAGATTCCTCGTCTCCTTCATGGACGGTGGCGG-AG--TCGGCGAGATTGTT-C--CTA 264
Query 300 AAGATTCCGACGACGTTCTT-AAGGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGT 358
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 265 AAGATTCCGACGACGTTCTTGAA-GAAGTCACTTTGGTCAAAGATGTTGACCTCGCCGGT 323
Query 359 AACTCTT-CCAACGGATTTGTCATCGACCGCCACCGAAACCGTCTCCTCCTCGCTGTCGG 417
||| ||| || | ||| | || |||||||| | |||||||||||| | || ||||
Sbjct 324 AACGCTTCCCTA-GGAATCGTTATCGACCGTGTTAGGAACCGTCTCCTCGTAGCCGTCGC 382
Query 418 CGATTTGCTTGGAAATCGTTATAGTGCTTTAGTGGCCTATGATTTGTCCACGTGGCGTCG 477
||| ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||
Sbjct 383 CGACTTGCTTGGAAACCGGTATAGTGCTTTAGCAGCCTATGATTTGTCCACGTGGCGTCG 442
Query 478 TCTCTTCCTCACAGTGCTTAGCAGCCATAGTAAAGAGATAACATACGCAGACGATGTAGC 537
|||||||||| | | |||||| | |||||||| |||| ||| | ||||||||||| ||
Sbjct 443 TCTCTTCCTCGCCGAGCTTAGTGGTCATAGTAACGAGAAAACGTTTGCAGACGATGTTGC 502
Query 538 TGTTGAT-ACACAAGGAAATGCTTATGT-ATCTGATGCAAAAG-GAGGTAAAATATGGGT 594
|||||| | |||||| ||||||||||| | |||||||||||| | ||||||| |||
Sbjct 503 CGTTGATGA-ACAAGGCAATGCTTATGTGA-CTGATGCAAAAGCTA-GTAAAATTTGGAA 559
Query 595 TGTTGATGTCAATGGAAAGCTAGTGTACACCATTAGAAGCCCTCTCTTCACTACACCTGG 654
|||||||| ||||||||||| ||| |||| |||| ||| ||||||| ||| |||||||
Sbjct 560 AGTTGATGTTAATGGAAAGCTTGTGAACACTATTACAAGTTCTCTCTTTACTCCACCTGG 619
Query 655 TTGGTATAATAACTTTGTCT-CTCTTAACGGCATTGTTTATCACCCGGAGGGGTTCCTTA 713
||||| |||||| |||| | |||| |||||||||||||||||||| || || |||||||
Sbjct 620 ATGGTACAATAACCTTGT-TGCTCTAAACGGCATTGTTTATCACCCCGACGGCTTCCTTA 678
Query 714 TCGTCATCCACACTTTCTCCGGTTTCTTATACAAAATCGA-TGTAACCAATGGGGATGTT 772
|||| || ||||||||||| |||| |||||||||||| || | |||||||||||||||||
Sbjct 679 TCGTTATTCACACTTTCTCTGGTTACTTATACAAAATTGACT-TAACCAATGGGGATGTT 737
Query 773 AGTAGTAAAGTCACTGTTATTGACGTTTCTGGTGGGT-CTTTGAGGTTTGGTGATGGGCT 831
|||| | |||| ||||| ||||| ||||||||| ||| | ||||||||||| ||||||||
Sbjct 738 AGTAATCAAGTTACTGTAATTGATGTTTCTGGT-GGTACATTGAGGTTTGGAGATGGGCT 796
Query 832 TGAGTTCTTGTCTCCAACCAAGATTGTTGTTGCAGGTAGCCCGTCTTCGAAACTGGTAGA 891
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 797 TGAGTTGTTGTCTCCAACCAAAATTGTTGTTGCAGGTAGCTCGTCTTCGAAACTGGTGGA 856
Query 892 GAGTTCAGACGGGTGGCGGACGGCTTCTGTGACGGGTTGGTTCAGCAGCGGTATGGTTCA 951
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 857 GAGTTCAGACGGGTGGAGAACCGCTTCTGTGACGGGTTGGTTCAGCAGCGGTATGGTTCA 916
Query 952 TCGGTTAGTCTCGTCGGCTACTGTTAAAGAAGGAAGAGTTTATCTTAATC-ACATTGTTG 1010
||||||||||||||||||||| || || ||||||||||||||| |||| | |||||||||
Sbjct 917 TCGGTTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTAT-TTAAACCACATTGTTG 975
Query 1011 GGTTTGGGTCTAAGAAGAGACACATACTTGTGGAAGCTGTGTTTTAGACTCTTTATTTGT 1070
| ||||||||||| |||| |||| ||||||| || ||||||||||||| | | || ||
Sbjct 976 GATTTGGGTCTAAAAAGAAACACGTACTTGTAGAGGCTGTGTTTTAGAGA-TGTCTTAGT 1034
Query 1071 AGTAGTAGTAATCTCTTTTTAAGTTCTGGTAG-TAATACAT-TCTTTATGATTCTACTCA 1128
| || |||||||| |||| || || | | |||| || ||| |||||||||| | |
Sbjct 1035 --TC-TA--AATCTCTTCTTAAATTGTG-T-GCTAATG-ATCTCTATATGATTCTATTGA 1086
Query 1129 AATCTGATGTA 1139
||||||||||
Sbjct 1087 GATCTGATGTA 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5