BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47440.1
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483921 jgi|Araly1|483921|fgenesh2_kg.4__2981__AT2G47440.1 2566 0.0
> Ahg483921 jgi|Araly1|483921|fgenesh2_kg.4__2981__AT2G47440.1
Length=1900
Score = 2566 bits (1389), Expect = 0.0
Identities = 1660/1783 (93%), Gaps = 50/1783 (3%)
Strand=Plus/Plus
Query 14 AAGCTGTCAtctatctctctctttccttatagtgctctgtttctctccacatt--cacac 71
||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 1 AAGCTGTCATC--TCTCTCTC-TTCCTTATAGGGCTCTGTTTCTCTCCACATTCACACAC 57
Query 72 ac--tctccctctctctct-c-cATTATTAAATCACTTGTTGTTGTCTTTCTTTTTTCAA 127
|| | ||||||||||||| | ||||||||||||||||| || | | |
Sbjct 58 ACAGTGTCCCTCTCTCTCTCCACATTATTAAATCACTTG-TGAAG-----C----AAGGA 107
Query 128 ACCTTGGAAGCAAGGAATTCTTTTT--TGATGATTTAATCGAAAGCTTCTTCCTCCAAAC 185
| || | || | || ||||| |||||||||||||||||||||||||||||||||
Sbjct 108 A-TTTCG-AG--ATTTCTTTTTTTTGATGATGATTTAATCGAAAGCTTCTTCCTCCAAAC 163
Query 186 AAACATCAATGGCGGTTTATCCTAACGTTAATGGCGATAAGAAGCACTGGTGGTTCACTC 245
||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 164 AAACATCAATGGCGG---------ACGTTAATGGCGATAAGAAGCACTGGTGGTTCAGTC 214
Query 246 ACAGAAAGCTTGTTGATAAGTATATAAAGGATGCAACAACTTTAATGGCAAGTGAGGAGG 305
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 215 ACAGGAAGCTTGTTGATAAGTATATCAAGGATGCAACAACTTTAATGGCAAGTGAGGAGG 274
Query 306 CAAACGACGTCGCTTCAGCTCTTCATTTACTAGACGCAGCCTTATCTATCTCCCCGCGTT 365
|||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||
Sbjct 275 CAAACGACGTCGCTTCTGCTCTTCATTTACTAGACGCTGCGTTATCCATATCCCCGCGTT 334
Query 366 TGGAAACTGCGTTAGAGCTCAAGGCTAGATCTCTCCTCTTCCTCCGTCGTTTCAAGGATG 425
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 335 TGGAAACTGCGTTAGAGCTTAAGGCTAGATCTCTGCTCTTCCTCCGTCGTTTCAAGGATG 394
Query 426 TCGCCGATATGCTTCAGGATTATATCCCCAGTCTTAAA------CT---CGACGACGAAG 476
|||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 395 TCGCCGATATGCTTCAGGATTATATCCCCAGTCTTAAACTCTCCCTCACCGACGAAGAAG 454
Query 477 GATCCGCTTCTTCTCAAGGCTCTTCTTCCTCCGACGGTA-TCAACCTTCTCTCCGACGCC 535
||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||
Sbjct 455 GATCCGCTTCTTCTCAA---TCCTCTTCCTCCGACGG-ACTCAACCTTCTCTCCGACGCC 510
Query 536 TCTTCCCCTGGCTCCTTTAAATGCTTCTCTGTTTCCGACTTGAAGAAGAAAGTCATGGCA 595
|| || || ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 511 TCCTCGCCGGGCTCGTTTAAATGCTTCTCTGTCTCCGACTTGAAGAAGAAAGTCATGGCA 570
Query 596 GGCATTTGTAAAAAATGCGACAAAGAAGGGCAATGGAGGTATGTGGTGTTGGGTCAAGCT 655
|| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 571 GGGATTTGTAAAAAATGCGACAAACAAGGGCAATGGAGGTATGTAGTGTTGGGTCAAGCT 630
Query 656 TGTTGCCATCTAGGACTAATGGAGGATGCCATGGTTCTCCTACAAACCGGTAAACGCCTC 715
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 631 TGTTGCCATCTAGGACTAATGGAGGATGCGATGGTTCTGCTTCAAACCGGTAAACGCCTC 690
Query 716 GCCTCCGCCGAGTTCCGTCGCCGGAGTATTTGCTGGTCCGACGATAGCTTCCTTCTCCTC 775
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 691 GCCTCCGCCGAGTTCCGTCGCCGGAGTATTTGCTGGTCTGACGATAGCTTCCTTCTCCTC 750
Query 776 TCCGAATCCTCCTCTGCTTCTTCTCCACCACCCGAGAGCGAGAACTTCACCCATCTCCTC 835
||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 751 TCCGAATCCTCCTCTACTTCTTCTCCACCACCGGAGAGCGAGAATTTCACCCATCTCCTC 810
Query 836 GCTCACATCAAGCTTCTTCTCCGTCGTCGCGCCGCTGCAATCGCCGCTCTCGACGCTGGA 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 811 GCTCACATCAAGCTTCTTCTCCGTCGTCGCGCCGCTGCAATCGCCGCTCTCGACGCCGGA 870
Query 896 CTGTTCTCCGAGTCGATCCGTCACTTCTCCAAGATCGTCGATGGCCGTCGCCCTGCGCCT 955
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 871 CTGTTCTCCGAGTCGATCCGTCACTTCTCCAAGATCGTCGATGGTCGTCGCCCTGCGCCT 930
Query 956 CAAGGATTCCTCGCCGAATGCTACATGCATCGAGCCGCCGCTTATAGATCCGCCGGTAGA 1015
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 931 CAAGGATTCCTCGCCGAATGCTATATGCATCGAGCCGCCGCTTATAGATCCGCCGGTAGA 990
Query 1016 ATCGCGGAAGCGATCGCCGATTGCAATAAAACCCTAGCTCTTGAACCCTCGTGTATCCAG 1075
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 991 ATCGCGGAAGCGATCGCCGATTGCAATAAAACCCTAGCTCTTGAACCGTCGTGTATCCAA 1050
Query 1076 GCGTTAGAAACCAGAGCCGCGCTTCTAGAAACGGTCAGGTGTTTTCCAGATTCGCTTCAC 1135
||||| || || ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 1051 GCGTTGGAGACGAGAGCCGCGCTCCTGGAAACGGTGAGGTGTTTTCCAGATTCGCTTCAC 1110
Query 1136 GATCTAGAACACTTGAAGCTTCTCTACAACACCATTTTACGCGATCGGAAGCTTCCGGGT 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1111 GATCTAGAACACTTGAAGCTTCTCTACAACACCATTTTACGCGATCGGAAGCTTCCAGGC 1170
Query 1196 CCGGTGTGGAAGCGGCACAACGTGAAATACAGAGAGATTCCTGGGAAATTGTGCGTTTTG 1255
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1171 CCGGTGTGGAAGCGGCACAACGTGAAATACAGAGAAATTCCTGGGAAATTGTGCGTTTTG 1230
Query 1256 ACAACGAAAACGCAGAAACTTAAGCAGAAAATCGCAAACGGAGAAACTGGGAATGTCGAT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 ACAACGAAAACGCAGAAACTTAAGCAGAAAATCGCAAACGGAGAAACTGGGAATGTCGAT 1290
Query 1316 TATTACGGCTTGATCGGAGTCAGACGCGGATGCACCAGATCGGAGCTCGATCGAGCTCAT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 TATTACGGCTTGATCGGAGTCAGACGCGGATGCACCAGATCGGAGCTCGATCGAGCTCAT 1350
Query 1376 CTATTGCTATGTCTCAGATACAAACCCGATAGAGCCTCTTCTTTCATCGAACGGTGCGAG 1435
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1351 CTATTGCTGTGTCTCAGATACAAACCCGATAGAGCCTCGTCTTTCATCGAACGGTGCGAG 1410
Query 1436 TTCACCGATCAAAACGACGTCGATTCGGTTAGAGATCGAGCCAAAATGTCGTCTCTGTTG 1495
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1411 TTCACCGATCAAAACGACGTCGATTCGGTTAGAGATCGAGCAAAAATGTCGTCTCTGTTG 1470
Query 1496 CTTTACCGTTTGATTCAGAAAGGATACACCGCCGTGACAGCGATCATAGCCGAGGAGCAG 1555
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1471 CTTTACCGTTTGATTCAGAAAGGATACTCCGCCGTGACAGCGATCATAGCCGAGGAGCAG 1530
Query 1556 AGGAAGAACGCCATTGCTCACGCTCAAAAGATTGAAGAACGCAAACCGGTTGAAAAATCC 1615
||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1531 AGGAAGAGCACCATTGCTCACGCTCAAAAGATTGAAGAACGCAAACCGGTGGAAAAATCA 1590
Query 1616 GGTTCT-ATTAAGAGAACCGGAAACGCTGAAACGAAACCGGTAAATTCCAATGCGTACCA 1674
| ||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1591 G-TTCCCATCAAGATAACCGGAAACGCTGAACCGAAACCGGTAAATTCCAATGCGTACCA 1649
Query 1675 AGGAGTATTCTGTAGAGATCTCGCTGCGGTTGGGAATCTACTAACCAGGGCTGGTTTCAA 1734
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1650 AGGAGTTTTCTGTAGAGATCTCGCTGCTGTTGGGAATCTACTAACCAGGGCTGGTTTTAA 1709
Query 1735 CCATCCAATCCCGGTTAAATACGAAGCGCTCACCTGCTAAAAA 1777
||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1710 CCATCCAATCCCGGTTAAATACGAAGCTCTCACTTGCTAAAAA 1752
Score = 180 bits (97), Expect = 4e-44
Identities = 142/161 (88%), Gaps = 14/161 (9%)
Strand=Plus/Plus
Query 1828 CGTTTCCGTAGATTCGTCTTCGGACAGAAAAACAAATCATTCAGCCGTCaaaaaagaaaa 1887
|||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 1753 CGTTTCCGTAGATTCGTCTTCGTACAGGAAAACAAATCATTCAGCCGTC----------A 1802
Query 1888 taaaataagaaaatatatataCATTTGATGTATGAATACAAATGAAACAA-TGTATTTAG 1946
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1803 -AAAATAAG-AAATATATATACATTTGATGTATGAATACAAATGAAACAAATGTATTTAT 1860
Query 1947 GTTTGGAAGATTATTCCAACTACAAGAAAATTTTGTCACTT 1987
|||||||||||||||||| ||||| |||| |||||||||||
Sbjct 1861 GTTTGGAAGATTATTCCA-CTACAGGAAATTTTTGTCACTT 1900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75190143630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5