BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47450.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935733 jgi|Araly1|935733|scaffold_403721.1 1685 0.0
> Ahg935733 jgi|Araly1|935733|scaffold_403721.1
Length=1143
Score = 1685 bits (912), Expect = 0.0
Identities = 1082/1159 (93%), Gaps = 32/1159 (3%)
Strand=Plus/Plus
Query 101 ATGCAAAAGGTCTTCTTGGCCATGGATACTTGTGCTCTAGTAATCCATCAGTCTCTGTCT 160
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGCAAAAGGTCTTCTTGGCCATGGATACGTGTGCTCTAGTTATCCATCAGTCTCTGTCT 60
Query 161 CGCATCAAACTTTCTCCTCCCAAAtcttcttcttcttcttcttctgctttctCCCCTGAA 220
||||||||||||||||||||||||||||||||||| | | |||| | ||| ||||
Sbjct 61 CGCATCAAACTTTCTCCTCCCAAATCTTCTTCTTC-TGGT-TTCT-C--TCT----TGAA 111
Query 221 TCCT-TACCGATCAGACGGATCGAGCTGTGTTTCCGAGGAGCTATATGTGCCGCCGTACA 279
| || ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 112 T-CTCTACCGATCAGACGGATCCAGCTGTGTTTCCGAGGAGCAAGATGTGCCGCCGTACA 170
Query 280 AAGAAACTACGAAGAAACGACCTCCTCCGTGGAAGAGGCAGAGGAAGATGATGAGTCATC 339
|| |||||||||||||||||||||||||||||| |||| | | || |||||||| | |
Sbjct 171 AAAAAACTACGAAGAAACGACCTCCTCCGTGGATGAGG-A-A-GACGATGATGA-TGA-- 224
Query 340 ATCATCGTACGGAGAAGTGAACAAGATCATTGGAAGCCGAACGGCGG-GGGA--AGGAGC 396
|||||||||||||||||||| | |||||||||||| |||||||||| || | ||||||
Sbjct 225 GTCATCGTACGGAGAAGTGAAGAGGATCATTGGAAGTCGAACGGCGGCGGAATTAGGAGC 284
Query 397 CATGGAGTACCTTATCGAGTGGAAGGACGGCCATTCTCCGTCGTGGGTTCCATCGAGCTA 456
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CATGGAGTATCTTATCGAGTGGAAGGACGGCCATTCTCCGTCGTGGGTTCCATCGAGCTA 344
Query 457 CATCGCAGCAGACGTAGTGTCGGAGTACGAGACACCCTGGTGGACGGCAGCTAGAAAAGC 516
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 345 CATCGCAGCAGACGTGGTGTCGGAGTACGAGACACCCTGGTGGACGGCAGCTAGGAAAGC 404
Query 517 CGACGAGCAGGCCCTGTCACAGCTCCTGGAGGACCGAGACGTCGATGCCGTGGACGAAAA 576
|||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| ||
Sbjct 405 CGACGAGCAGGCCCTGTCACAGCTTCTGGAGGACCGAGACGTCAACGCCGTAGACGAGAA 464
Query 577 CGGCCGGACGGCTCTGCTTTTCGTGGCAGGTCTGGGGTCGGACAAGTGCGTAAGGCTTCT 636
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 465 CGGCAGGACGGCTCTGCTTTTCGTGGCAGGTCTGGGGTCAGACAAGTGCGTAAGGCTTCT 524
Query 637 GGCGGAGGCTGGAGCCGATCTCGACCACCGAGACATGAGGGGAGGCTTGACGGCGCTGCA 696
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 525 GGCGGAGGCTGGAGCCGATCTCGACCACCGAGACATGAGGGGGGGCTTGACGGCGCTGCA 584
Query 697 CATGGCGGCTGGTTACGTGAGGCCGGAGGTGGTGGAGGCGCTGGTGGAGCTGGGAGCTGA 756
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 585 CATGGCGGCTGGTTACGTGAAGCCGGAGGTGGTGGAGGCGCTGGTGGAGCTGGGCGCTGA 644
Query 757 TATTGAAGTGGAAGACGAGAGAGGGTTAACGGCGTTGGAACTAGCGAGGGAGATTCTGAA 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TATTGAAGTGGAAGACGAGAGAGGGTTAACGGCGTTGGAACTAGCGAGGGAGATTCTGAA 704
Query 817 GACGACGCCGAAGGGGAATCCGATGCAGTTCGGGAGGAGAATTGGGTTAGAGAAAGTGAT 876
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GACGACGCCAAAGGGGAATCCGATGCAGTTCGGGAGGAGAATTGGGTTAGAGAAAGTGAT 764
Query 877 CAATGTCCTGGAAGGACAAGTGTTCGAGTACGCCGAGGTGGATGAGATCGTAGAGAAACG 936
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 765 CAATGTCCTCGAAGGACAAGTGTTCGAGTACGCGGAGGTGGAGGAGATCGTAGAGAAACG 824
Query 937 AGGGAAAGGCAAAGACGTTGAATATCTGGTCAGATGGAAGGACGGTGGAGATTGCGAGTG 996
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 825 AGGGAAAGGCAAAGACGTTGAATATCTGGTCAGATGGAAGGACGGTGAAGATTGCGAGTG 884
Query 997 GGTGAAAGGTGTACACGTGGCGGAAGATGTGGCTAAGGACTACGAGGATGGGCTGGAGTA 1056
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 885 GGTGAAAGGCGTACACGTGGCGGAAGATGTGGCCAAGGACTACGAGGATGGGCTGGAGTA 944
Query 1057 CGCTGTAGCGGAGAGTGTGATCGGGAAGAGGGTGGGAGACGATGGGAAGACCATCGAGTA 1116
||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 945 CGCTGTAGCAGAGAGGGTGATCGGGAAGAGGGTGGCAGACGATGGGAAGACCATCGAGTA 1004
Query 1117 TCTTGTCAAATGGACTGATATGTCTGATGCCACTTGGGAGCCTCAGGACAATGTCGACTC 1176
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1005 TCTTGTCAAATGGACTGATATGTCTGATGCCACTTGGGAGCCTCAAGACAATGTCGACTC 1064
Query 1177 TACTCTTGTTCTACTCT----AC-----C---AACAACAACAACCAATGAATGAATGATT 1224
||| ||| ||||||||| || | ||||||||||||||||||||||||||||
Sbjct 1065 TACACTTATTCTACTCTACCAACAAGAACAAGAACAACAACAACCAATGAATGAATGATT 1124
Query 1225 GATTTTGATGATTACATTC 1243
|||||| ||||| | ||||
Sbjct 1125 GATTTTCATGATGATATTC 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5