BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47460.1 Length=1453 Score E Sequences producing significant alignments: (Bits) Value Ahg483923 jgi|Araly1|483923|fgenesh2_kg.4__2983__AT2G47460.1 2023 0.0 Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710 416 2e-115 > Ahg483923 jgi|Araly1|483923|fgenesh2_kg.4__2983__AT2G47460.1 Length=1364 Score = 2023 bits (1095), Expect = 0.0 Identities = 1289/1379 (93%), Gaps = 27/1379 (2%) Strand=Plus/Plus Query 1 ACTCAGTAACTTCTCTTTCTCACTTACACActctctctctctctc--tcCATTGCCTTGA 58 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| Sbjct 1 ACTCAGTAACTTCTCTTTCTCACTTACACACTCTCTCTCTCTCTCTTTCCGTTG-CTTGA 59 Query 59 CTTTTGTGGTCAGTGGAATAAACACATATAACCGCCGGAGAAAATGGGAAGAGCGCCATG 118 | ||||||||||| | |||||| |||||||||||||| |||||||||| |||||||| || Sbjct 60 C-TTTGTGGTCAGCGTAATAAATACATATAACCGCCGTAGAAAATGGGCAGAGCGCCGTG 118 Query 119 TTGCGAGAAGGTCGGTATCAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTC 178 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TTGCGAGAAGGTCGGTATTAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTC 178 Query 179 CAACTACATTCAATCCAACGGTGAAGGTTCTTGGAGATCTCTCCCCAAAAATGCCGGATT 238 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 179 CAACTACATTCAATCCAACGGCGAAGGATCTTGGAGATCTCTCCCCAAAAATGCCGGATT 238 Query 239 AAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATCTAAGATCAGACCTCAA 298 |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct 239 AAAAAGGTGTGGAAAGAGCTGTAGGTTGAGATGGATAAACTATCTTAGATCCGACCTCAA 298 Query 299 GCGTGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGG 358 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 GCGTGGGAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGG 358 Query 359 AAACAGGTGGTCACTAATCGCGGGTCATCTACCAGGGAGAACAGACAACGAAATAAAAAA 418 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 359 AAACAGGTGGTCACTAATTGCGGGTCATCTTCCAGGGAGAACAGACAACGAAATAAAAAA 418 Query 419 TTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTCATTAGGAAGCCATCCATCTC 478 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 419 TTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTTATTAGGAAGCCGTCCATCTC 478 Query 479 TCAAGACGTCTCCGCCGTAATCATGACGAACGCTTCTTCAGCGCCACCGCCGCCGCAGGC 538 |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| Sbjct 479 TCAAGACGTCTCCGCCGTAATCATGA--A-CGCTTCTTCAGCGCCACCGCAGCCGCAGGC 535 Query 539 AAAACGCAGACTTGGGAGAACGAGTAGGTCCGCTATGAAACCAAAAATCCACAGAACAAA 598 |||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 536 AAAACGCAGACTCGGGAGAACAAGTAGATCCGCCATGAAACCAAAAATCCACAGAACAAA 595 Query 599 AACTCGTAAAACGAAGAAAACGTCTGCACCACCGGAGCCTAACGCCGATGTAGCTGG-GG 657 |||||| ||||| ||||||||||||||||| || |||||||| ||||| ||||| || || Sbjct 596 AACTCGAAAAACAAAGAAAACGTCTGCACCGCCCGAGCCTAAAGCCGACGTAGC-GGTGG 654 Query 658 CTGATAAAGAAGCATTAATGGTGGAGTCAAGTGGAGCCGAGGCTGAGCTAGGACGACCAT 717 |||| ||| ||||||||||||||||| |||||||||||||||||||||||||| | || Sbjct 655 CTGAGGAAGGAGCATTAATGGTGGAGTTAAGTGGAGCCGAGGCTGAGCTAGGAC--C-AT 711 Query 718 GTGACTACTATGGAGATGATTGTAACAAAAATCTCATGAGCATTAATGGCGATAATGGAG 777 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 712 GTGACTACTATGGAGATGATTGTAATAAAAATCTCATGAGCATTAATGGCGATAATGGAG 771 Query 778 TTTTAACGTTTGATGATGATATCATCGATCTTTTGTTGGACGAGTCAGATCCTGGCCACT 837 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 772 TTTTAACGTTTGATGATGACATCATCGATCTTTTGTTGGACGAGTCAGATCCTGGCGACT 831 Query 838 TGTACACAAACACAACGTGCGGTGGTGATGGGGAGTTGCATAACATAAGAGACTCTGAAG 897 ||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 832 TGTACACAA-C-----GTGCGGTGGTGATGGGGAGTTGAATAACATGAGAGACTCTGAAG 885 Query 898 GAGCCAGAGGGTTCTCGGATACTTGGAACCAAGGGAATCTCGACTGTCTTCTTCAGTCTT 957 ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| | Sbjct 886 GAGCCAGAGGGTTCTCGGAGACTTCGAACCAAGGGAGTCTCGACTGTCTTCTTCAGTCGT 945 Query 958 GTCCATCGGTGGAGTCGTTTCTCAACTACGACCACCAAGTTAACGATGCGTCGACGGATG 1017 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 946 GTCCATCGGTGGAGTCGTTTCTCAACTATGACCACCAAGTTAACGATGCGTCAACGGATG 1005 Query 1018 AGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATCTTTGGCATGAGA 1077 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1006 AGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATATTTGGCATGAGA 1065 Query 1078 AAGAGAATCCCGACTCAATGGTCTCGTGGCTTTTAGACGGTGATGATGAGGCCACGATCG 1137 |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1066 AAGAGAGTCCCGACTCAATGGTGTCGTGGCTTTTGGACGGTGATGATGAGGCCACGATCG 1125 Query 1138 GGAATAGTAATTGTGAGAACTTTGGAGAACCGTTAGATCATGACGACGAAAGCGCTTTGG 1197 |||| ||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||| Sbjct 1126 GGAAAAGTAATTGTCAGAACTTCGGAGAACCGTTGGATCATGACGACGAAAACGCTTTGG 1185 Query 1198 TCGCTTGGCTTCTGTCATGATGATATTGATTGATCCGTTATGTAATCTTTTTT-----GT 1252 |||||||||||||||| ||||||||||||||||||||||| |||||||||||| || Sbjct 1186 TCGCTTGGCTTCTGTCTTGATGATATTGATTGATCCGTTAAGTAATCTTTTTTTTTTTGT 1245 Query 1253 GCATTCACAGTTTGAATCTATTCCACGTCGTATCATATCATAAAGTTTAGGATCTAAATA 1312 | |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1246 GTATTCACAGTTTGAATCTATTCCACGTCGCATCATATCTTAAAGTTTAGGATCTAAATA 1305 Query 1313 TTAGTCCATTAGTTAAAATTATCT--A-A-TGCAATAAAACCCATGGGATGTTTGGATT 1367 ||||||||||||||| |||||| | | | ||||||||||| ||||||||| ||| ||| Sbjct 1306 TTAGTCCATTAGTTAGAATTATATGTATAATGCAATAAAACTCATGGGATGCTTGTATT 1364 > Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710 Length=987 Score = 416 bits (225), Expect = 2e-115 Identities = 312/354 (88%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 102 ATGGGAAGAGCGCCATGTTGCGAGAAGGTCGGTATCAAG-AGAGGGCGGTGGACGGCGGA 160 |||||||||||||| || || |||||||| || || ||| || ||||| ||||||||||| Sbjct 1 ATGGGAAGAGCGCCTTGCTGTGAGAAGGTAGGAATGAAGAAG-GGGCGCTGGACGGCGGA 59 Query 161 GGAGGACCAGATTCTCTCCAACTACATTCAATCCAACGGTGAAGGTTCTTGGAGATCTCT 220 ||| ||||||||||||||| |||||||||| |||||||| ||||| || ||| | ||||| Sbjct 60 GGAAGACCAGATTCTCTCCGACTACATTCAGTCCAACGGCGAAGGCTCATGGCGTTCTCT 119 Query 221 CCCCAAAAATGCCGGATTAAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTA 280 |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| Sbjct 120 TCCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTA 179 Query 281 TCTAAGATCAGACCTCAAGCGTGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAA 340 | | ||||||||||||||| | |||||||||||||| |||||||| || ||| ||||||| Sbjct 180 TTTGAGATCAGACCTCAAGAGAGGAAACATAACTCCTGAAGAAGAGGACCTCATTGTTAA 239 Query 341 ATTGCATTCCACTTTGGGAAACAGGTGGTCACTAATCGCGGGTCA-TCTACCAGGGA-GA 398 ||||||||||||||||||||||||||||||| |||| ||| | || |||||| |||| || Sbjct 240 ATTGCATTCCACTTTGGGAAACAGGTGGTCAATAATTGCGAG-CAATCTACC-GGGAAGA 297 Query 399 ACAGACAACGAAATAAAAAATTATTGGAACTCTCATCTCAGCCGTAAACTCCAC 452 |||||||| ||||| ||||| |||||||| |||||||||||||||||| ||||| Sbjct 298 ACAGACAATGAAATTAAAAACTATTGGAATTCTCATCTCAGCCGTAAATTCCAC 351 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54354779615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5