BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47485.1
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483928 jgi|Araly1|483928|fgenesh2_kg.4__2988__AT2G47485.1 785 0.0
> Ahg483928 jgi|Araly1|483928|fgenesh2_kg.4__2988__AT2G47485.1
Length=580
Score = 785 bits (425), Expect = 0.0
Identities = 521/566 (92%), Gaps = 12/566 (2%)
Strand=Plus/Plus
Query 1 TATCGATCCGTGCTCTTTATAAAGAAACCTAGAGTGtctccgtctctctcact-acattc 59
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 1 TATCGATCCGTGCTCTTTATAATGAAACCTAGAGTGTCTCCGTCTCTCTCACTAAAATTC 60
Query 60 tccactgttcacattctctctctctctctGGATCTCTAGACACC---A-ATACGCATA-G 114
||||| | ||||| | ||||||||| |||||||||||||| | ||| |||
Sbjct 61 TCCACCGCTCACA-----T-TCTCTCTCTAGATCTCTAGACACCAATATATATTAATATA 114
Query 115 TGAGCAGAGATCGTGATGGAGATAAGGTATTGGCGGAGGTTAAGAGGATACCAAAGGCTA 174
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TGAGCAGAGATTGCGATGGAGATAAGGTATTGGCGGAGGTTAAGAGGATACCAAAGGCTA 174
Query 175 GATGGTTCTGCCAAGAAGGCGAGCTCGGGCCGGAGAAATGTAAAGCGGGTCAAAATGGAT 234
||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 175 GATGGGTCTGCCAAGAAGGCGAACTCGGGTCGGAGAAATGTGAAGCGGGTCAAAATGGAT 234
Query 235 CCCACACGGAAGAGACGGTTTTGGAGGATCAAGATAGTGCCGAAGCTAAGGATCTTGAAA 294
|| || ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 235 CCGACCCGGAAGAGACGGTTTTGGAGGATCAAGATTGTGCCGAAGCTAAGGTTCTTAAAA 294
Query 295 AAGGCGTCGCCTAAGAAGCTTTTAACGTGGCTTCGAGATGCTTACGTCAACATGATGCTG 354
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAGTCGTCGCCTAAGAAGCTTTTAACGTGGCTTCGAGATGCTTACGTCAACATGATGCTA 354
Query 355 CGCCTAGCGAATTCTCGGGTCGTCGGATCATCGTACGGGTACGGCGAATATGGGTACGGG 414
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 CGCCTAGCGAATTCTGGGGTCGTCGGGTCATCGTACGGGTACGGCGAATATGGGTACGGG 414
Query 415 TCGGGTTTGGCGTCGAAGGAGTATGACGAGAAGAAGCTGGTGGAGATTTACAAATCGATA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCGGGTTTGGCGTCGAAGGAGTATGACGAGAAGAAGCTGGTGGAGATTTACAAATCGATA 474
Query 475 TTGATGGCTCAGGGGAATCTCGTGCACCGTGACGTACCTAAACTGTCCTCAAATTCGATT 534
|||||||| || |||||||||||| |||| |||||||||||||| ||||| |||||||||
Sbjct 475 TTGATGGCACACGGGAATCTCGTGTACCGCGACGTACCTAAACTTTCCTCCAATTCGATT 534
Query 535 TTACTCTCACCCATTAGGTAATTTAA 560
|||| |||||| |||||||||||||
Sbjct 535 CTACTTTCACCCCTTAGGTAATTTAA 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24932387718
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5