BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47490.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483929 jgi|Araly1|483929|fgenesh2_kg.4__2989__AT2G47490.1 2026 0.0
> Ahg483929 jgi|Araly1|483929|fgenesh2_kg.4__2989__AT2G47490.1
Length=1409
Score = 2026 bits (1097), Expect = 0.0
Identities = 1191/1235 (96%), Gaps = 11/1235 (1%)
Strand=Plus/Plus
Query 18 CTTTGTTCTGTTTCTCTGCGATTTCTTCGATGTTCCTCTTCTTCGTTTTGATTTTCAGAT 77
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTTTGTTCTGTTTCTCTGCGATTTCTTCGATGTTCTTCTTCTTCGTTTTGATTTTCAGAT 60
Query 78 TTGTTTAACTCGGTCGTTGCGTTGACTTCAAATTTCTTAAAagagagagagagagagaga 137
|||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||| |
Sbjct 61 TTGTTTAACTCGGTCGCTGCGTTGACTT-AAAATTCTTGAGAGAGAGAGAGAGAGAGAAA 119
Query 138 ggag-aT----AG-TTCAGAAAATCTGTCAGACTTGGGATCTTTCTCGGCAATGCGACGC 191
|||| || || |||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 120 GGAGAATCAAGAGACTCAG--AATCAGTCAGACTCGGGATCTTTCTCGGCAATGCGACGC 177
Query 192 TTGTTCGCCGCGAAATCCCTCTCCCGAGAGGATA-CAACCTTTTTGTCATTCTCTTCTTC 250
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 178 TTGTTCGCCGCGAAATCCCTCTCCAGAGAGGA-ACCAACCTTTTTGTCATTCTCTTCTTC 236
Query 251 TTCGGTGACGCGTTTCCTCAAGGCTCTTCTTCCTCTCCGTTCAGATCCAAGAGATGTCCG 310
||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 237 TTCGGCGACGCGTTTCCACAAGGCTCTTCTTCCTCTCCGTTCAGATCCAAGACATGTCCG 296
Query 311 CTAATTCTCATCCTCCTAATTCCAAAAACGTCCTCTGTAATGCAGCCGCCGGTGCCGCCG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTAATTCTCATCCTCCTAATTCCAAAAACGTCCTCTGTAATGCAGCCGCCGGTGCCGCCG 356
Query 371 CCGGGGTTGTTGCGGCTACGTTTGTGTGTCCTCTTGATGTTATAAAAACGAGGTTTCAGG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCGGGGTTGTTGCGGCTACGTTTGTGTGTCCTCTTGATGTTATAAAAACGAGGTTTCAGG 416
Query 431 TTCATGGGCTGCCTAAGCTCGGTGATGCAAACATCAAAGGTAGTCTAATTGTTGGCAGTC 490
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTCATGGGTTGCCAAAGCTCGGTGATGCAAACATCAAAGGTAGTCTAATTGTTGGCAGTC 476
Query 491 TTGAGCAGATCTTCAAGAGAGAAGGGATGCGTGGCTTATACCGCGGTCTTTCCCCTACTG 550
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 477 TTGAGCAGATCTTCAAGAGAGAAGGGATGCGTGGCTTATACCGCGGACTTTCCCCAACTG 536
Query 551 TCATGGCTCTTCTCTCCAATTGGGCCATTTATTTTACAATGTATGACCAGCTCAAGAGCT 610
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 537 TGATGGCTCTTCTCTCCAATTGGGCAATTTATTTTACAATGTATGACCAGCTCAAGAGCT 596
Query 611 TTCTTTGTTCAAATGATCACAAACTCAGCGTTGGAGCTAACGTATTGGCTGCTTCGGGAG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 TTCTTTGTTCAAATGATCACAAACTCAGCGTTGGAGCTAACGTATTGGCTGCTTCTGGAG 656
Query 671 CTGGAGCTGCAACTACCATTGCCACAAATCCTCTTTGGGTCGTCAAGACTAGACTTCAGA 730
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 657 CTGGAGCTGCAACTACCATTGCCACAAATCCTCTTTGGGTTGTCAAGACTAGACTTCAGA 716
Query 731 CACAAGGAATGAGAGTGGGTATAGTGCCATACAAAAGCACATTTTCTGCTTTAAGGAGAA 790
|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 717 CACAAGGAATGAGAGTGGGTGTAGTGCCATACAAAAGCACACTGTCTGCTTTAAGGAGAA 776
Query 791 TAGCTTATGAGGAGGGAATTCGCGGATTGTACAGTGGTCTTGTCCCTGCACTAGCTGGTA 850
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 777 TAGCTTACGAGGAGGGAATTCGTGGATTGTACAGTGGTCTTGTGCCTGCACTAGCTGGTA 836
Query 851 TCAGTCATGTTGCCATTCAGTTTCCCACATATGAGATGATCAAAGTGTACTTGGCCAAGA 910
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 837 TCAGTCATGTTGCCATTCAGTTTCCTACATATGAGATGATCAAAGTCTACTTGGCCAAGA 896
Query 911 AAGGTGATAAATCAGTCGATAACCTCAATGCTCGTGATGTAGCAGTTGCCTCTTCGATTG 970
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 897 AAGGTGATAAATCAGTCGATAACCTCAATGCCCGTGATGTAGCAGTTGCCTCTTCGATTG 956
Query 971 CAAAGATATTTGCATCCACATTAACTTACCCGCACGAGGTAGTACGAGCTAGGCTTCAAG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAAAGATATTTGCATCCACATTAACTTACCCGCACGAGGTAGTACGAGCTAGGCTTCAAG 1016
Query 1031 AGCAAGGGCACCACAGTGAGAAACGTTACTCAGGAGTAAGAGATTGCATCAAGAAAGTGT 1090
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1017 AGCAAGGGCACCACAGTGAGAAACGTTACTCAGGAGTAAGAGATTGCATAAAGAAAGTGT 1076
Query 1091 TTGAGAAAGATGGGTTCCCTGGTTTTTACAGAGGCTGCGCCACGAATCTACTGAGAACAA 1150
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 TTGAGAAAGATGGGTTCCCGGGTTTTTACAGAGGCTGCGCCACGAATCTCCTGAGAACAA 1136
Query 1151 CTCCTGCAGCAGTTATAACTTTCACTAGCTTCGAAATGGTGCATCGTTTCCTCGTCACTC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCCTGCAGCAGTTATAACTTTCACTAGCTTCGAAATGGTGCATCGTTTCCTCGTCACTC 1196
Query 1211 ATATACCTTCTGAGCAAAGCTCTATACTTTAAATC 1245
|||||||||||||||||||||||||||||||||||
Sbjct 1197 ATATACCTTCTGAGCAAAGCTCTATACTTTAAATC 1231
Score = 91.6 bits (49), Expect = 2e-17
Identities = 60/65 (92%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 1438 AAAA-AACTGACTCTTTTATTTCTCTGTTTTTTGGGCCTTCATGTTACTGAAAGGAAACA 1496
|||| |||||| |||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 1346 AAAATAACTGATTCTTTTATTTCTCTCTTTTCTGGG-CTTCATGTTACTGAAAGGAAACA 1404
Query 1497 TATAT 1501
|||||
Sbjct 1405 TATAT 1409
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1311 CCTTTTGGGAAATGATTCAAAATAGAAGTTCTTTTCTGG 1349
||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 CCTTTTGGGAAATGATTCAAAATAGAAGTTCTTTTATGG 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5