BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47590.1 Length=1766 Score E Sequences producing significant alignments: (Bits) Value Ahg483939 jgi|Araly1|483939|fgenesh2_kg.4__2999__AT2G47590.1 2643 0.0 > Ahg483939 jgi|Araly1|483939|fgenesh2_kg.4__2999__AT2G47590.1 Length=1722 Score = 2643 bits (1431), Expect = 0.0 Identities = 1609/1691 (95%), Gaps = 28/1691 (2%) Strand=Plus/Plus Query 81 acacacacaAAATGGATTCTTCGAATGTTGAAG--AA-AACCTAAACCCAGAAACAAAAT 137 ||||||| |||||||| |||||| |||||| || |||||||||||||||||||||| Sbjct 43 ACACACAAAAAATGGA---TTCGAACCTTGAAGAAAAGAACCTAAACCCAGAAACAAAAT 99 Query 138 CCGCAGAAGAACAAAACCCACTTGCCATTTTCCATTCTTCTCTACCAATCGCATCTCTTT 197 ||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 100 CCGCAGAAGAAGAAAACCCACTCGCCATTATCCATCCTTCTCTACCAATCGCATCTCTTT 159 Query 198 CTCTGACCTTGTT-CCCATCCTCGACTCAATTTCTCAAATTGTTTGCTCATCATCCAAAC 256 ||||||||||||| |||| | || ||||||||||||||| ||||| ||||||| |||||| Sbjct 160 CTCTGACCTTGTTCCCCA-CATCAACTCAATTTCTCAAACTGTTTTCTCATCACCCAAAC 218 Query 257 AAGGTTAAGATCCCTACGCAGGcttcttctctcactcatctctctctttcttctgtctct 316 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||| Sbjct 219 AAGGTTAAGATCCCTACGCAGGCCTCTTCTCTCACTCATCTCTCTCTTTATTC--T-TCT 275 Query 317 cct-t-t-tcctt---cttccagaatctctttcAAATCCACCATCGCTGCTAACCCTCTT 370 ||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 CCTGTCTCTCCTTCACCTTCCAGAATCTCTTTCAAATCCACCATCGCTGCTAACCCTCTT 335 Query 371 CAATCCCCTCTCTCCATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 430 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 CACTCCCCTCTCTCTATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 395 Query 431 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 455 Query 491 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGAGAT 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 456 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGGGAT 515 Query 551 TACGGCAAGTCCTCTTCCGGCTTCGACAAAACGGGGCCTTTTCGTGCCCAGTTTCTGATT 610 ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 516 TACGGGAAATCCTCTTCCGGGTTCGACAAAACGGGGCCTTTTCGAGCCCAGTTTCTGATT 575 Query 611 GAGTCCGTTTCGGAGCTCCGGAAGAATCTCCAAGCCAGAGGGTCGAATCTAGTTGTCCGT 670 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 576 GAGTCCGTCTCGGAGCTCCGGAAGAATCTCCAAGCGAGAGGGTCGAATCTAGTTGTCCGT 635 Query 671 GTCGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 730 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 636 GTAGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 695 Query 731 TATGCTCACAGAGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACCGCG 790 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 696 TATGCTCACAGGGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACGGCG 755 Query 791 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCATTTGGAT 850 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 756 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCACTTGGAT 815 Query 851 GATTTGCCCTTCAAAATTGAAGACTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 910 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 816 GATTTGCCCTTCAAAATTGAAGATTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 875 Query 911 CAGAAATTGGAGATTAGGAAGACTATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 970 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 876 CAGAAACTGGAGATTAGGAAGACAATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 935 Query 971 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTGGATCTTGGCATTAGCCCCACT 1030 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 936 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTTGATCTTGGCATTAGCCCCACT 995 Query 1031 CCTAGGACTAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1090 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 GCTAGAACCAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1055 Query 1091 AGACTAAAGAGCTTTGCCGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1150 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1056 AGACTAAAGAGCTTTGCAGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1115 Query 1151 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1116 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1175 Query 1211 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCCGCATCAACC 1270 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1176 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCTGCATCAACC 1235 Query 1271 ACCTCCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1330 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1236 ACCACCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1295 Query 1331 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1296 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1355 Query 1391 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACATTTGAAAACTTT 1450 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1356 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACCTTTGAAAACTTT 1415 Query 1451 CAGGTGACCGGAAAAGTTAGAAGCGACCTGTTTCTTTGCCCTACTCT-GGTGTATGGTGG 1509 |||||||||||||||||||||| | | ||||| ||||||||||||| ||||||||||| Sbjct 1416 CAGGTGACCGGAAAAGTTAGAACCCATTTGTTT-TTTGCCCTACTCTTGGTGTATGGTGA 1474 Query 1510 AT-TAATTTGCTATCCGGACAGGACTTTACTGCTCTCTTTTGAAACTTGAGTGTCAGGAG 1568 || || ||| ||||| |||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1475 ATCTA-TTTACTATCTGGACAGGACTGAACTGCTCTCTTTTGAAACTTGAGTGTCTGGAG 1533 Query 1569 AATAAAATCTAAGCTTCtttttttG---GCTCAATCAAGTTGTCCGTTCCCTGTTCTAAA 1625 ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1534 AATGAATTCTAAGCTTCTTTTTTTTTTTGCTCAATCAAGTTGTCCGTTCCCTGTTCTAA- 1592 Query 1626 CATTTCGGATACTCATTCCATAAAAAGTCTCTACAATTTGAGACGCTCTCCTTTGTGGTT 1685 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1593 CATTTCGGATACTCATTCCATAAAAAGTCTCTAGAATTTGAGACGCTCTCCTTTGCGGTT 1652 Query 1686 -AAGACTTGAGAATGTATCTTAGAAAATAAC-CGAAGTAGTTGTGTCTATGAATATTAAA 1743 |||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 1653 TAAGACTTGAGAATGTATCTTAGAAAATATCTC-AAGTAGTTGTGTCTATGAATATTAAA 1711 Query 1744 TTCAGGAATAT 1754 ||||||||||| Sbjct 1712 TTCAGGAATAT 1722 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66277026300 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5