BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47710.1 Length=809 Score E Sequences producing significant alignments: (Bits) Value Ahg935759 jgi|Araly1|935759|scaffold_403747.1 841 0.0 > Ahg935759 jgi|Araly1|935759|scaffold_403747.1 Length=533 Score = 841 bits (455), Expect = 0.0 Identities = 510/536 (95%), Gaps = 6/536 (1%) Strand=Plus/Plus Query 87 CGCCGGCGAACAACGT-CA-GAGTCATGGCCACCGGAGATGGGAAATCGGTGATGGTCGT 144 ||||||||||| | || | ||||||||||||||||||||| |||||||||||||||||| Sbjct 1 CGCCGGCGAAC-A-GTGAAGGAGTCATGGCCACCGGAGATGAGAAATCGGTGATGGTCGT 58 Query 145 CGGAGTTGACGACAGCGAGCAGAGCACTTACGCCTTGGAGTGGACGCTCGATCGTTTCTT 204 |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 59 CGGAGTCGACGACAGCGAGCAGAGCACTTACGCCTTGGAGTGGACCCTCGATCGCTTCTT 118 Query 205 CGCTCCTTACGCTCCCAATTATCCTTTTAAGCTCTTCATCGTCCACGCCAAACCTAACGC 264 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 119 CGCTCCTTACGCTCCCAATTATCCGTTTAAGCTCTTCATCGTCCACGCCAAACCTAACGC 178 Query 265 CGTCTCCGCCGTTGGTCTCGCTGGTCCCGGAACTGCGGAGGTTGTACCTTATGTTGATGC 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CGTCTCCGCCGTTGGTCTCGCTGGTCCCGGAACTGCGGAGGTTGTACCTTATGTTGATGC 238 Query 325 TGATCTGAAGCATACCGCTGCTAAGGTTGTCGAGAAAGCCAAAGCAATTTGTCAGAGCAG 384 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TGATCTGAAGCGTACCGCTGCTAAGGTTGTCGAGAAAGCCAAAGCAATTTGTCAGAGCAA 298 Query 385 ATCGGTTCATGGCGCGGTGATCGAAGTTTTCGAAGGTGATGCAAGGAATATCCTATGTGA 444 |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 299 ATCGGTTCATGGTGCGGTGGTCGAAGTTTTTGAAGGTGATGCAAGGAATATCCTATGTGA 358 Query 445 AGTTGTAGATAAGCATCATGCTTCTATTCTTGTTGTGGGAAGCCATGGATATGGAGCTAT 504 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AGTTGTAGATAAGCACCATGCTTCTATTCTTGTTGTGGGAAGCCATGGATATGGAGCTAT 418 Query 505 CAAGAGGGCGGTTCTCGGGAGTACGAGTGACTACTGCGCTCATCATGCTCATTGCTCGGT 564 ||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| Sbjct 419 CAAGAGGGCGGTTCTCGGGAGCACGAGCGACTACTGCGCCCATCACGCTCATTGTTCGGT 478 Query 565 GATGATCGTGAAGAAGCCTAAGATCAAGGTCTGAAACC-TAAGGGAAGGCTACTCG 619 ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 479 CATGATCGTGAAGAAGCCTAAGATCAAGGTCTGAAACCCTAAGCAAAG-CTACTCG 533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29888366928 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5