BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47770.1 Length=1044 Score E Sequences producing significant alignments: (Bits) Value Ahg483960 jgi|Araly1|483960|fgenesh2_kg.4__3020__AT2G47770.1 1327 0.0 > Ahg483960 jgi|Araly1|483960|fgenesh2_kg.4__3020__AT2G47770.1 Length=1038 Score = 1327 bits (718), Expect = 0.0 Identities = 935/1032 (91%), Gaps = 45/1032 (4%) Strand=Plus/Plus Query 27 TATCTaaaaacaaaaaaCAATTAATTAGCATTCGACGTGTACATATCACTCGCCACGTG- 85 |||| |||||| |||||||||| ||| ||||| ||||||||| |||| |||||||||| Sbjct 38 TATCCAAAAAC--AAAACAATTATTTAACATTCCACGTGTACACATCAGTCGCCACGTGT 95 Query 86 ---T--A-CA--AGAGCCTTGGCCTTTTTGCTTCTTCTTCTTGTCTATT-A-AT-ATCAT 134 | | || ||||||||||||| |||||||||||||| |||||| | || ||||| Sbjct 96 CTCTCCATCACCAGAGCCTTGGCCTCTTTGCTTCTTCTTC---TCTATTAATATCATCAT 152 Query 135 CTCCTGATTATACTCTCTTTTGACCAAGCTGCTTCTTCTCCATCTATCCAACATCTCAAA 194 |||||||||||| ||||| |||||||||||||||||| | ||| | | ||||||||| Sbjct 153 CTCCTGATTATA--CTCTTCTGACCAAGCTGCTTCTTCAACTTCT-T-CTCCATCTCAAA 208 Query 195 TCTCAGTAATCTTGTTCCTTCGATT-CTGTTTTGGACGTTTGTAATGGATTCTCAGGACA 253 | ||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 209 TTTCAATAATCTTGTTTCTTCG-TTCCTGTTTTGGACGTTTGTAATGGATTCTCAGGACA 267 Query 254 TCAGATACCGCGGCGGAGACGACAGAGACGCTGCAACGACGGCTATGGCCGAGACAGAGA 313 |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 268 TCAGATACCGTGGCGGAGACGACAGAGACGCTGCGACGACGGCTATGGCTGAGACAGAGA 327 Query 314 GGAAAAGCGCTGACGACAACAAAGGAAAACGCGATCAAAAGAGGGCGATGGCGAAACGTG 373 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 328 GGAAAAACGCTGACGACAACAAAGGAAAACGCGATCAAAAGAGGGCCATGGCGAAACGCG 387 Query 374 GTCTCAAGTCTCTGACGGTAGCGGTTGCGGCTCCTGTGCTCGTGACGCTCTTCGCTACGT 433 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 388 GTCTCAAATCTCTGACGGTAGCGGTTGCGGCTCCTGTGCTCGTGACGCTCTTCGCCACGT 447 Query 434 ATTTCCTCGGCACAAGCGACGGATACGGGAATCGAGCTAAGTCCTCGTCGTGGATCCCAC 493 |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| Sbjct 448 ATTTCCTCGGCACAAGCGACGGCTACGGGAATCGAGCTCGGTCGTCGTCGTGGATCCCAC 507 Query 494 CTCTGTGGCTCCTACACACAACGTGTCTCGCTTCTAGTGGTCTGATGGGTTTGGCTGCGT 553 ||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||||| Sbjct 508 CTCTGTGGCTCCTACACACCACGTGTCTCGCGTCGAGCGGTCTGATGGGATTGGCTGCGT 567 Query 554 GGCTTGTATGGGTTGACGGTGGCTTCCACAAGAAGCCCAATGCTCTGTATCTTTACTTAG 613 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 568 GGCTTGTATGGGTCGACGGTGGCTTCCACAAGAAGCCCAATGCTCTGTATCTTTACTTGG 627 Query 614 CTCAGTTTTTGCTCTGTTTGGTTTGGGATCCGGTTACGTTCCGCGTCGGGTCGGGAGTAG 673 |||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||| Sbjct 628 CTCAGTTTATGCTCTGTTTGGTTTGGGATCTGGTTACGTTCCGGGTCGGGTCGGGAATAG 687 Query 674 CGGGGCTTGCGGTGTGGTTGGGTCAATCGGCTGCGTTATTCGGATGCTACAAGGCCTTTA 733 | |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 688 CCGGGCTTGCGGTGTGGTTGGGTCAATCAGCTGCGTTGTTCGGATGTTACAAGGCCTTTA 747 Query 734 ATGAGATAAGTCCGGTCGCTGGTAATCTGGTAAAGCCGTGTTTGGCTTGGGCTGCCTTTG 793 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 748 ATGAGATAAGTCCGGTCGCTGGTAATCTGGTAAAGCCGTGTTTGGCTTGGGCTGCATTTG 807 Query 794 TAGCCGCTGTTAATGTAAAGCTTGCAGTCGCGTGAGATCTGTAAACGCTATACGATGATG 853 |||||||||||||||||||||||||||||||||||||||||||||||| | | ||| | Sbjct 808 TAGCCGCTGTTAATGTAAAGCTTGCAGTCGCGTGAGATCTGTAAACGCCAC-C-ATG-T- 863 Query 854 TTTGTAGAGTCTGAGTCATATGAGTGTTT-CTTGTTGtttttgttttttGTGATATATAC 912 || |||||||| | | || |||||||| ||| | | |||||| ||||||||||| Sbjct 864 TT-GTAGAGTC--A-T-AT--GAGTGTTTTCTT-T-G-----GTTTTT-GTGATATATAC 908 Query 913 CATAAAAGATGTCTTTGCGATCCAATGGTCTGGTCATTGTGGAGTAATAGACATGAACAT 972 ||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 909 -ATAAA-GATGTCATTGCGATCCAATGGTCTACTCATTGTGGAGTAATAGACATGAACAT 966 Query 973 GATATACTTGAGAAATAATGTGATATTGTAGAAGTTTTAAGCGTTGGTCTGAAATCAAAC 1032 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 967 GATATACTTGAGAAATAATGTGATATGGTATAAGTTTTAAGCGTTGGTCTGAAATCAAAC 1026 Query 1033 TGTGAGATTCTT 1044 ||||||||||| Sbjct 1027 AGTGAGATTCTT 1038 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38847252423 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5