BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47780.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935766 jgi|Araly1|935766|scaffold_403754.1 1122 0.0
> Ahg935766 jgi|Araly1|935766|scaffold_403754.1
Length=753
Score = 1122 bits (607), Expect = 0.0
Identities = 689/729 (95%), Gaps = 3/729 (0%)
Strand=Plus/Plus
Query 6 CAACGGCACCAAGTCTTTGACAATGGCT---GAAGATGAAATAGTAGTCGAAGAAGAGCA 62
||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1 CAACGGCTCCAAGTTTTTGACAATGGCTGAAGAAGATGAGATAGTAGTCGAAGAAGAGCA 60
Query 63 ATCACAGCCACAGGAGATTACTCCAGTTCCACCATCTTCTTCGTCTTCGCCTTCGTTAGT 122
||||||||||| |||| |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 61 ATCACAGCCACCGGAGGTTACTCCAGTGCCACCATCTTCTTCGCCCTCGCCTTCGTTAGT 120
Query 123 GGTGGAAGACGACGATGAGATGAAGCTCAAGCACTTGGAATTCATTCAAGTCGCGGCGGT 182
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GGTGGAAGACGACGATGAGATGAAGCTCAAGCACTTGGAATTCATCCAAGTCGCGGCGGT 180
Query 183 TTACTTCGCCGCCTGTTTCTCGACCCTCTACGAGTTGGCTAAAGACAACGCTGGTCCACT 242
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 181 TTACTTCGCCGCCTGTTTCTCCACGCTCTACGAGTTGGCTAAAGACAACGCTGGTCCCCT 240
Query 243 CAAACTCGGCGTCGAGAACATTGAAGATTGCGTTCGAACCGTGCTTGCTCCATTATACGA 302
| ||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CCAACTCGGTGTCGAAAACATCGAAGATTCCGTTCGAACCGTGCTTGCTCCATTATACGA 300
Query 303 AAAATTCCACGACGTTCCTTTCAAGCTTCTCCTTTTCGTCGATCGTAAGGTGGACGATGT 362
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 CAAATTCCACGACGTTCCTTTCAAGCTTCTCCTCTTCGTCGATCGTAAGGTGGACGATGT 360
Query 363 GTTCTTCGATGTTGAGACATATGTTCCGTCATTGGTGAAGCAAGCTTCTAGCCAAGCGCT 422
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| ||
Sbjct 361 GTTCTTCGATGTTGAGACATACGTTCCTTCGCTGGTGAAGCAAGCTTCTAGCCAAGCACT 420
Query 423 CACGGTGGCCACGGAGGTGCAGCGCACCGGCGTTGTGGACACTACCAAGAGCATTGCAAG 482
|||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||| ||
Sbjct 421 CACGGTGGCCACAGAGGTGCAACGCGCCGGCGTTGTGGACACCACCAAGAGCATTGCGAG 480
Query 483 AAGCGTCCGGGACAAGTACGAGCCAGCGGCAGAGTATTACGCAGCGACGCTGTGGCGTTT 542
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 481 GAGCGTCCGGGACAAGTACGAGCCTGTGGCAGAGTATTACGCTGCGACGCTGTGGCGTTT 540
Query 543 ACTGAATCAACTGCCGTTGTTCCCTGAAGTTGCGCATTTAGTGATCCCCACGGCGTTTTA 602
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTGAATCAAGTGCCCTTGTTCCCTGAAGTTGCGCATTTAGTGATCCCCACGGCGTTTTA 600
Query 603 CTGGTCAGAGAAGTACAACGATGCGGTTCGTTACGTTGGCGACAGAGACTACTTTGGGGC 662
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 CTGGTCAGAGAAGTACAACGATGCTGTTCGTTACGTTGGCGACAGAGACTACTTTGGGGC 660
Query 663 AGAGTATCTACCCATGATTCCTATTGAGAAGATCTCTGATATTTTGGAACAAGATCAGTG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAGTATCTACCCATGATTCCTATTGAGAAGATCTCTGATATTTTGGAACAAGATCAGTG 720
Query 723 TCGAGCTGA 731
|||| ||||
Sbjct 721 TCGATCTGA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5