BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47830.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322424 jgi|Araly1|322424|fgenesh1_pm.C_scaffold_4002481 1960 0.0
> Ahg322424 jgi|Araly1|322424|fgenesh1_pm.C_scaffold_4002481
Length=1389
Score = 1960 bits (1061), Expect = 0.0
Identities = 1175/1228 (96%), Gaps = 15/1228 (1%)
Strand=Plus/Plus
Query 245 GCCTGGAGAAGAAGGGGAGAAGATATTCCGGCTAGGTCTCACCGCAGATATAGGTTTATC 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 162 GCCTGGAGAAGAAGGGGAGAAGATTTTCCGGCTAGGTCTCACCGCAGATATAGGTTTATC 221
Query 305 TGTCGCAAAAGCTCTCACCGGTTATCTCTGCGGCAGCACCGCCATTATCGCCGATGCTGC 364
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 222 TGTCGCAAAAGCTCTCACCGGCTATCTCTGCGGCAGCACCGCCATTATAGCCGACGCTGC 281
Query 365 TCATTCCGTTTCCGATGTGGTTCTAAGTGGTGTTGCTCTAGTGTCTTACAGAGCTGCAAA 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 282 TCATTCCGTTTCCGATGTGGTTCTAAGTGGAGTTGCTCTAGTGTCTTACAGAGCTGCAAA 341
Query 425 TGTTCCCAAGGACAAAGAACATCCTTATGGTCATGGTAAATTTGAAACGCTTGGAGCACT 484
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 342 TGTTCCCAAGGACAAAGAACATCCATATGGTCATGGTAAATTTGAAACACTTGGAGCCCT 401
Query 485 TGGCATCTCTGCCATGCTTTTGGCTACTGGCTCTGGTATTGCCTGGCATGCTTTAGACCT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TGGCATCTCTGCCATGCTTTTGGCTACTGGCTCTGGTATTGCCTGGCATGCTTTAGACCT 461
Query 545 TTTATCTATTGCACTGTCCGCAGCTCCTGAGGT-AAT--TCAT-A--GTGGACATCATCA 598
|||||||||||| |||||||||||||||||||| | |||| | |||||||||||||
Sbjct 462 TTTATCTATTGCCCTGTCCGCAGCTCCTGAGGTCCTTCATCATCACGGTGGACATCATCA 521
Query 599 CGGCATTGATATGAATCATCCCATTCTCGCTTTGACTGTTACTATTGCTTCCATTTCTAT 658
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 522 CGGAATTGATATGAATCATCCCATTCTCGCTTTGACTGTTACTATTGCTTCCATTTCTGT 581
Query 659 CAAAGAAGGGCTTTATTGGATCACAAAACGAGCAGGTGAAAAACAAGGGAGTGGTTTGAT 718
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 582 CAAAGAAGGGCTTTATTGGATCACAAAACGAGCTGGAGAAAAACAAGGGAGTGGATTGAT 641
Query 719 GATGGCAAATGCTTGGCATCATCGATCAGATGCTATTTCTTCTCTAGTTGCACTTGTTGG 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 642 GATGGCAAATGCTTGGCATCATCGATCAGATGCTATTTCTTCTGTAGTTGCACTTGTTGG 701
Query 779 AGTTGGAGGTTCTATTCTCGGAGTTAATTTTTTAGATCCTCTAGCTGGCCTTGTTGTCTC 838
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 702 AGTTGGAGGTTCTATGCTCGGAGTTAACTTTTTAGATCCTCTAGCTGGCCTCGTTGTCTC 761
Query 839 GACAATGATTGTCAATGCCGGACTGAAAACAGGACACCAAAGTATCTTGGAACTCGTGGA 898
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GACAATGATTTTCAATGCCGGACTGAAAACAGGACACCAAAGTATCTTGGAACTCGTGGA 821
Query 899 TGCTGCTATACCAGCTCAGCAATTAGAGCCAATAAGACAAACCATATTACAGGTTGAAGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TGCTGCTATACCAGCTCAGCAATTAGAGCCAATAAGACAAACCATATTACAGGTTGAAGG 881
Query 959 AGTGAAGGGATGTCATCGGCTAAGGGGTAGGAGAGCTGGTTCATCGTTGTATCTTGATGT 1018
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGTCAAGGGATGTCATCGGCTAAGGGGTAGGAGAGCTGGTTCATCGTTGTATCTTGATGT 941
Query 1019 ACACATTGTGGTAGATCCTTTTTCCAGTGTGAGTGTCGCACATGAGGTAGGAGAATATGT 1078
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 942 ACACATTGTGGTAGATCCTTTTTCCAGTGTGAGTGTTGCCCATGAGGTAGGAGAATATGT 1001
Query 1079 ACGGAGACAGATTAATTTGAACCATCCTGAAGTGTCCGAAGTTTTTATTCATATAGATCC 1138
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 ACGGAGACAGATTAATATGAACCATCCTGAAGTGTCCGAAGTTTTTATTCATATAGATCC 1061
Query 1139 AGCCTTTTTACAGTTTTCTTGTAGCACCAAGGATCATGACAGTATAACGAA--G------ 1190
||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 1062 AGCCTTTTTACAGTTTTCTTGTAGCACGATGGATCATGACAGTATAACGAAAAGTAATCA 1121
Query 1191 -GAAAGTAACATCTGCCAAGAGATTAAACATGTTGAAGCCACTGTCTCAGACATTTTTTC 1249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AGAAAGTAACATCTGCCAAGAGATTAAACATGTTGAAGCCACTGTCTCAGACATTTTTTC 1181
Query 1250 GTCGCAGTTGTCTGAGAAATTGACGATCAAACGAATTACACCCCACTTGTTACATAGCAA 1309
||| ||||| ||||||||| |||||||||||||||||||| |||||||| | ||||||||
Sbjct 1182 GTCACAGTTATCTGAGAAAATGACGATCAAACGAATTACAACCCACTTGCTGCATAGCAA 1241
Query 1310 GATCTTGCTCCAAATCGTAGTCGCCATGCCATCAACCATGTCCATACAGGACGTCATGAT 1369
||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 1242 GATCTTGCTCCAAATCGTAGTCGCCATGCCATCGACCATGACAATACAGGACGTCATGAG 1301
Query 1370 AGCTGCTGAACATGCAGAGAAAGAGATTCTGAAGGCAGCCCCAAATGTGGCTCGTGTCAG 1429
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AGCCGCTGAACATGCAGAGAAAGAGATTCTGAAGGCAGCCCCAAATGTGGCTCGTGTCAG 1361
Query 1430 CATTCAGCTTAGTCTTAACTCCGAATAA 1457
||||||||||||||||||||||||||||
Sbjct 1362 CATTCAGCTTAGTCTTAACTCCGAATAA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5