BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47880.1 Length=632 Score E Sequences producing significant alignments: (Bits) Value Ahg952138 jgi|Araly1|952138|scaffold_3900004.1 603 6e-172 Ahg935776 jgi|Araly1|935776|scaffold_403764.1 603 6e-172 > Ahg952138 jgi|Araly1|952138|scaffold_3900004.1 Length=350 Score = 603 bits (326), Expect = 6e-172 Identities = 343/351 (98%), Gaps = 1/351 (0%) Strand=Plus/Plus Query 65 TCTTCAGACTTCTGAGGATCATGGACAAAGTGATGAGAATGTCTTCAGAGAAAGGAGTGG 124 |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1 TCTTCAGATTTCTGAGGATCATGGACAAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGG 60 Query 125 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAAATCCTGTTCCGTGACC 184 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAGATCCTGTTCCGTGACC 120 Query 185 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 180 Query 245 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 240 Query 305 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTTGTCCCATTGA 364 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 241 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTCGTCCCCTTGA 300 Query 365 TCAAACCCTATCAGTCCATCCTTTACTAGCAAAATTAAACCAACTCAATAT 415 ||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 301 TCAAACCCTATCAGTCCATCCTTTACTAGCAAA-TCAAACCAACTCAATAT 350 > Ahg935776 jgi|Araly1|935776|scaffold_403764.1 Length=350 Score = 603 bits (326), Expect = 6e-172 Identities = 343/351 (98%), Gaps = 1/351 (0%) Strand=Plus/Plus Query 65 TCTTCAGACTTCTGAGGATCATGGACAAAGTGATGAGAATGTCTTCAGAGAAAGGAGTGG 124 |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1 TCTTCAGATTTCTGAGGATCATGGACAAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGG 60 Query 125 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAAATCCTGTTCCGTGACC 184 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAGATCCTGTTCCGTGACC 120 Query 185 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA 180 Query 245 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC 240 Query 305 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTTGTCCCATTGA 364 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 241 TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTCGTCCCCTTGA 300 Query 365 TCAAACCCTATCAGTCCATCCTTTACTAGCAAAATTAAACCAACTCAATAT 415 ||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 301 TCAAACCCTATCAGTCCATCCTTTACTAGCAAA-TCAAACCAACTCAATAT 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23140610619 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5